myRT

myRT report for GCA_013337495.1_ASM1333749v1

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Seq: SWJT01000001.1 Pseudomonas sp. UMC3129 UMC3129_1, whole genome shotgun sequence (516094 bp)
Overview 1 RT 1: 375777-378984 bp Neighborhood of RT #1 [375777, 378998] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 375777-376178 bp Feature: gene Location: 376189-376623 bp Feature: gene Location: 376620-377921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 377004-377688 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 377004-377688 bp Feature: gene Location: 377985-378380 bp Feature: domain Description: Avd_like Location: 378051-378357 bp Feature: domain Description: Avd_like Location: 378051 -378357 bp Feature: gene Location: 378399-378998 bp Feature: domain Description: DUF1566 Location: 378828-378984 bp Feature: domain Description: DUF1 566 Location: 378828-378984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: SWJT01000021.1 Pseudomonas sp. UMC3129 UMC3129_21, whole genome shotgun sequence (111870 bp)
Overview 1 RT 1: 43265-49727 bp Neighborhood of RT #1 [43265, 49741] AAA_15 TOPRIM_OLD RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 43265-45682 bp Feature: domain Description: AAA_15 Location: 43268-44588 bp Feature: domain Description: AAA_15 Location: 432 68-44588 bp Feature: domain Description: TOPRIM_OLD Location: 44753-44999 bp Feature: domain Description: TOPRIM_OLD Location: 44753-44999 bp Feature: gene Location: 46029-46835 bp Feature: gene Location: 47007-48371 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 47235-47838 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 472 35-47838 bp Feature: gene Location: 48368-48922 bp Feature: domain Description: SLATT_5 Location: 48374-48893 bp Feature: domain Description: SLATT_5 Location: 48374-48893 bp Feature: gene Location: 49328-49741 bp Feature: domain Description: HEPN_RiboL-PSP Location: 49331-49727 bp Feature: domain Description: HEPN_RiboL-PSP Location: 49331-4972 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)

Seq: SWJT01000026.1 Pseudomonas sp. UMC3129 UMC3129_26, whole genome shotgun sequence (106636 bp)
Overview 1 RT 1: 50340-59193 bp Neighborhood of RT #1 [50340, 59219] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 50340-51596 bp Feature: domain Description: PRK10770 Location: 50394-51588 bp Feature: domain Description: PRK10770 Location: 503 94-51588 bp Feature: gene Location: 51613-54414 bp Feature: domain Description: LptD Location: 51982-54400 bp Feature: domain Description: LptD Location: 51982-54400 bp Feature: gene Location: 54547-56259 bp Feature: domain Description: RVT_N Location: 54604-54847 bp Feature: domain Description: RVT_N Location: 54604-54847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54892-55528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54892-55528 bp Feature: domain Description: YkfC Location: 55738-55888 bp Feature: domain Description: YkfC Location: 5573 8-55888 bp Feature: domain Description: HNH Note: nucleases Location: 56065-56203 bp Feature: domain Description: HNH Note: nucleases Location: 56065-56203 bp Feature: gene Location: 57532-58548 bp Feature: domain Description: COG3178 Location: 57538-58531 bp Feature: domain Description: COG3 178 Location: 5753 8-5853 1 bp Feature: gene Location: 58545-59219 bp Feature: domain Description: NTP_transferase_like_1 Location: 58551-59193 bp Feature: domain Description: NTP_transferase_like_1 Location: 58551-59193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)