myRT

myRT report for GCA_013337505.1_ASM1333750v1

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Seq: SUQJ01000021.1 Pseudomonas sp. UMC631 UMC631_21, whole genome shotgun sequence (111626 bp)
Overview 1 RT 1: 61887-67680 bp Neighborhood of RT #1 [61887, 68363] HEPN_RiboL-PSP SLATT_5 RVT-UG17 AAA_15 TOPRIM_OLD Feature: gene Location: 61887-62300 bp Feature: domain Description: HEPN_RiboL-PSP Location: 61890-62286 bp Feature: domain Description: HEPN_RiboL-PSP Location: 61 890-62286 bp Feature: gene Location: 62706-63260 bp Feature: domain Description: SLATT_5 Location: 62712-63231 bp Feature: domain Description: SLATT_5 Location: 6271 2-63231 bp Feature: gene Location: 63257-64621 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 63485-64088 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 63485-64088 bp Feature: gene Location: 64793-65599 bp Feature: gene Location: 65946-68363 bp Feature: domain Description: AAA_15 Location: 65949-67269 bp Feature: domain Description: AAA_1 5 Location: 65949-67269 bp Feature: domain Description: TOPRIM_OLD Location: 67434-67680 bp Feature: domain Description: TOPRIM_OLD Location: 67434-67680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_RiboL-PSP (pfam18735), SLATT_5 (pfam18160), RVT-UG17, AAA_15 (pfam13175), TOPRIM_OLD (cd01026)

Seq: SUQJ01000065.1 Pseudomonas sp. UMC631 UMC631_65, whole genome shotgun sequence (31173 bp)
Overview 1 RT 1: 11110-19981 bp Neighborhood of RT #1 [11110, 19989] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 11110-11784 bp Feature: domain Description: NTP_transferase_like_1 Location: 11116-11758 bp Feature: domain Description: NTP_transferase_like_1 Location: 11116-11758 bp Feature: gene Location: 11781-12797 bp Feature: domain Description: COG3178 Location: 11787-12780 bp Feature: domain Description: COG3178 Location: 11787-12 780 bp Feature: gene Location: 14070-15782 bp Feature: domain Description: RVT_N Location: 14127-14370 bp Feature: domain Description: RVT_N Location: 1412 7-14370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14415-15051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14415-15051 bp Feature: domain Description: YkfC Location: 15261-15411 bp Feature: domain Description: YkfC Location: 152 61-15411 bp Feature: domain Description: HNH Note: nucleases Location: 15588-15726 bp Feature: domain Description: HNH Note: nucleases Location: 15588-1572 6 bp Feature: gene Location: 15915-18716 bp Feature: domain Description: LptD Location: 16284-18702 bp Feature: domain Description: LptD Location: 162 84-18702 bp Feature: gene Location: 18733-19989 bp Feature: domain Description: PRK10770 Location: 18787-19981 bp Feature: domain Description: PRK10770 Location: 18787-19981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: SUQJ01000008.1 Pseudomonas sp. UMC631 UMC631_8, whole genome shotgun sequence (152871 bp)
Overview 1 RT 1: 41959-45166 bp Neighborhood of RT #1 [41959, 45180] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 41959-42360 bp Feature: gene Location: 42371-42805 bp Feature: gene Location: 42802-44103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43186-43870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43 186-43 870 bp Feature: gene Location: 44167-44562 bp Feature: domain Description: Avd_like Location: 44233-44539 bp Feature: domain Description: Avd_like Location: 4423 3 -4453 9 bp Feature: gene Location: 44581-45180 bp Feature: domain Description: DUF1566 Location: 45010-45166 bp Feature: domain Description: DUF1566 Location: 45010-45166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)