myRT

myRT report for GCA_013337545.1_ASM1333754v1

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Seq: SWJU01000012.1 Pseudomonas sp. UMC3103 UMC3103_12, whole genome shotgun sequence (144468 bp)
Overview 1 RT 1: 41981-45188 bp Neighborhood of RT #1 [41981, 45202] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 41981-42382 bp Feature: gene Location: 42393-42827 bp Feature: gene Location: 42824-44125 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43208-43892 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43208-43892 bp Feature: gene Location: 44189-44584 bp Feature: domain Description: Avd_like Location: 44255-44561 bp Feature: domain Description: Avd_like Location: 44255-44561 bp Feature: gene Location: 44603-45202 bp Feature: domain Description: DUF1566 Location: 45032-45188 bp Feature: domain Description: DUF1 566 Location: 45032-451 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: SWJU01000029.1 Pseudomonas sp. UMC3103 UMC3103_29, whole genome shotgun sequence (80927 bp)
Overview 1 RT 1: 12361-18823 bp Neighborhood of RT #1 [12361, 18837] AAA_15 TOPRIM_OLD RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 12361-14778 bp Feature: domain Description: AAA_15 Location: 12364-13684 bp Feature: domain Description: AAA_15 Location: 12 364-13684 bp Feature: domain Description: TOPRIM_OLD Location: 13849-14095 bp Feature: domain Description: TOPRIM_OLD Location: 13849-14095 bp Feature: gene Location: 15125-15931 bp Feature: gene Location: 16103-17467 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16331-16934 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16331-16934 bp Feature: gene Location: 17464-18018 bp Feature: domain Description: SLATT_5 Location: 17470-17989 bp Feature: domain Description: SLATT_5 Location: 17470-17989 bp Feature: gene Location: 18424-18837 bp Feature: domain Description: HEPN_RiboL-PSP Location: 18427-18823 bp Feature: domain Description: HEPN_RiboL-PSP Location: 1842 7-1882 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)

Seq: SWJU01000047.1 Pseudomonas sp. UMC3103 UMC3103_47, whole genome shotgun sequence (53768 bp)
Overview 1 RT 1: 11026-19879 bp Neighborhood of RT #1 [11026, 19905] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 11026-12282 bp Feature: domain Description: PRK10770 Location: 11080-12274 bp Feature: domain Description: PRK10770 Location: 11080-12274 bp Feature: gene Location: 12299-15100 bp Feature: domain Description: LptD Location: 12668-15086 bp Feature: domain Description: LptD Location: 12668-15086 bp Feature: gene Location: 15233-16945 bp Feature: domain Description: RVT_N Location: 15290-15533 bp Feature: domain Description: RVT_N Location: 15290-1553 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15578-16214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15578-16214 bp Feature: domain Description: YkfC Location: 16424-16574 bp Feature: domain Description: YkfC Location: 16424-16574 bp Feature: domain Description: HNH Note: nucleases Location: 16751-16889 bp Feature: domain Description: HNH Note: nucleases Location: 16751-16889 bp Feature: gene Location: 18218-19234 bp Feature: domain Description: COG3178 Location: 18224-19217 bp Feature: domain Description: COG3 178 Location: 18224-19217 bp Feature: gene Location: 19231-19905 bp Feature: domain Description: NTP_transferase_like_1 Location: 19237-19879 bp Feature: domain Description: NTP_transferase_like_1 Location: 1923 7-19879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)