myRT

myRT report for GCA_013337585.1_ASM1333758v1

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Seq: SUQS01000031.1 Pseudomonas sp. UMA603 UMA603_31, whole genome shotgun sequence (80925 bp)
Overview 1 RT 1: 12359-18821 bp Neighborhood of RT #1 [12359, 18835] AAA_15 TOPRIM_OLD RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 12359-14776 bp Feature: domain Description: AAA_15 Location: 12362-13682 bp Feature: domain Description: AAA_1 5 Location: 1 2362-1 3682 bp Feature: domain Description: TOPRIM_OLD Location: 13847-14093 bp Feature: domain Description: TOPRIM_OLD Location: 1 3847-1 4093 bp Feature: gene Location: 15123-15929 bp Feature: gene Location: 16101-17465 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16329-16932 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 6329-1 6932 bp Feature: gene Location: 17462-18016 bp Feature: domain Description: SLATT_5 Location: 17468-17987 bp Feature: domain Description: SLATT_5 Location: 1 7468-1 7987 bp Feature: gene Location: 18422-18835 bp Feature: domain Description: HEPN_RiboL-PSP Location: 18425-18821 bp Feature: domain Description: HEPN_RiboL-PSP Location: 1 8425-1 8821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)

Seq: SUQS01000038.1 Pseudomonas sp. UMA603 UMA603_38, whole genome shotgun sequence (67521 bp)
Overview 1 RT 1: 47408-56279 bp Neighborhood of RT #1 [47408, 56287] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 47408-48082 bp Feature: domain Description: NTP_transferase_like_1 Location: 47414-48056 bp Feature: domain Description: NTP_transferase_like_1 Location: 47414-48056 bp Feature: gene Location: 48079-49095 bp Feature: domain Description: COG3178 Location: 48085-49078 bp Feature: domain Description: COG3178 Location: 48085-49078 bp Feature: gene Location: 50368-52080 bp Feature: domain Description: RVT_N Location: 50425-50668 bp Feature: domain Description: RVT_N Location: 5042 5-50668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50713-51349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50713-51349 bp Feature: domain Description: YkfC Location: 51559-51709 bp Feature: domain Description: YkfC Location: 51559-51709 bp Feature: domain Description: HNH Note: nucleases Location: 51886-52024 bp Feature: domain Description: HNH Note: nucleases Location: 51886-52 02 4 bp Feature: gene Location: 52213-55014 bp Feature: domain Description: LptD Location: 52582-55000 bp Feature: domain Description: LptD Location: 52 582 -55000 bp Feature: gene Location: 55031-56287 bp Feature: domain Description: PRK10770 Location: 55085-56279 bp Feature: domain Description: PRK10770 Location: 55085-562 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: SUQS01000005.1 Pseudomonas sp. UMA603 UMA603_5, whole genome shotgun sequence (235510 bp)
Overview 1 RT 1: 190372-193593 bp Neighborhood of RT #1 [190372, 193593] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 190372-190971 bp Feature: domain Description: DUF1566 Location: 190801-190957 bp Feature: domain Description: DUF1566 Location: 190801-190957 bp Feature: gene Location: 190990-191385 bp Feature: domain Description: Avd_like Location: 191056-191362 bp Feature: domain Description: Avd_like Location: 191056-1913 62 bp Feature: gene Location: 191449-192750 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 191833-192517 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19183 3 -192517 bp Feature: gene Location: 192747-193181 bp Feature: gene Location: 193192-193593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs