myRT

myRT report for GCA_013337595.1_ASM1333759v1

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Seq: SUQL01000017.1 Pseudomonas sp. UMA643 UMA643_17, whole genome shotgun sequence (111242 bp)
Overview 1 RT 1: 62091-67884 bp Neighborhood of RT #1 [62091, 68567] HEPN_RiboL-PSP SLATT_5 RVT-UG17 AAA_15 TOPRIM_OLD Feature: gene Location: 62091-62504 bp Feature: domain Description: HEPN_RiboL-PSP Location: 62094-62490 bp Feature: domain Description: HEPN_RiboL-PSP Location: 62094-62490 bp Feature: gene Location: 62910-63464 bp Feature: domain Description: SLATT_5 Location: 62916-63435 bp Feature: domain Description: SLATT_5 Location: 6291 6-63435 bp Feature: gene Location: 63461-64825 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 63689-64292 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 63689-64292 bp Feature: gene Location: 64997-65803 bp Feature: gene Location: 66150-68567 bp Feature: domain Description: AAA_15 Location: 66153-67473 bp Feature: domain Description: AAA_1 5 Location: 661 53-67473 bp Feature: domain Description: TOPRIM_OLD Location: 67638-67884 bp Feature: domain Description: TOPRIM_OLD Location: 67638-67884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_RiboL-PSP (pfam18735), SLATT_5 (pfam18160), RVT-UG17, AAA_15 (pfam13175), TOPRIM_OLD (cd01026)

Seq: SUQL01000004.1 Pseudomonas sp. UMA643 UMA643_4, whole genome shotgun sequence (173029 bp)
Overview 1 RT 1: 41859-45066 bp Neighborhood of RT #1 [41859, 45080] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 41859-42260 bp Feature: gene Location: 42271-42705 bp Feature: gene Location: 42702-44003 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43086-43770 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43086-43770 bp Feature: gene Location: 44067-44462 bp Feature: domain Description: Avd_like Location: 44133-44439 bp Feature: domain Description: Avd_like Location: 44133-44439 bp Feature: gene Location: 44481-45080 bp Feature: domain Description: DUF1566 Location: 44910-45066 bp Feature: domain Description: DUF1566 Location: 44910-45066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: SUQL01000054.1 Pseudomonas sp. UMA643 UMA643_54, whole genome shotgun sequence (53881 bp)
Overview 1 RT 1: 11201-20054 bp Neighborhood of RT #1 [11201, 20080] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 11201-12457 bp Feature: domain Description: PRK10770 Location: 11255-12449 bp Feature: domain Description: PRK10770 Location: 11255-12449 bp Feature: gene Location: 12474-15275 bp Feature: domain Description: LptD Location: 12843-15261 bp Feature: domain Description: LptD Location: 12843 -15261 bp Feature: gene Location: 15408-17120 bp Feature: domain Description: RVT_N Location: 15465-15708 bp Feature: domain Description: RVT_N Location: 15465-15708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15753-16389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15753 -163 89 bp Feature: domain Description: YkfC Location: 16599-16749 bp Feature: domain Description: YkfC Location: 16599-16749 bp Feature: domain Description: HNH Note: nucleases Location: 16926-17064 bp Feature: domain Description: HNH Note: nucleases Location: 16926-17064 bp Feature: gene Location: 18393-19409 bp Feature: domain Description: COG3178 Location: 18399-19392 bp Feature: domain Description: COG3 178 Location: 183 99-193 92 bp Feature: gene Location: 19406-20080 bp Feature: domain Description: NTP_transferase_like_1 Location: 19412-20054 bp Feature: domain Description: NTP_transferase_like_1 Location: 19412-20054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)