myRT

myRT report for GCA_013342395.1_ASM1334239v1

Download annotations/find similar RTs

Seq: JABUWP010000128.1 Escherichia coli strain d11-1 NODE_128_length_1666_cov_28.022092, whole genome shotgun sequence (1666 bp)
Overview 1 RT 1: 2-1457 bp Neighborhood of RT #1 [2, 1465] GIIM RVT-GII RVT-GII Feature: gene Location: 2-274 bp Feature: domain Description: GIIM Note: maturase Location: 26-233 bp Feature: domain Description: GIIM Note: maturase Location: 26-233 bp Feature: gene Location: 315-926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-903 bp Feature: gene Location: 917-1465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1388-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 388-1 457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII

Seq: JABUWP010000002.1 Escherichia coli strain d11-1 NODE_2_length_154117_cov_36.584051, whole genome shotgun sequence (154117 bp)
Overview 1 RT 1: 146611-151491 bp Neighborhood of RT #1 [146611, 151491] PRK09692 RVT-UG5 nitrilase Feature: gene Location: 146611-147861 bp Feature: domain Description: PRK09692 Location: 146620-147820 bp Feature: domain Description: PRK09692 Location: 14662 0-14782 0 bp Feature: gene Location: 147927-148109 bp Feature: gene Location: 148185-149900 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 148404-148935 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 148404-148935 bp Feature: gene Location: 149849-150805 bp Feature: domain Description: nitrilase Location: 150092-150731 bp Feature: domain Description: nitrilase Location: 150092 -150731 bp Feature: gene Location: 150802-151491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424)

Seq: JABUWP010000036.1 Escherichia coli strain d11-1 NODE_36_length_51185_cov_36.535215, whole genome shotgun sequence (51185 bp)
Overview 1 RT 1: 1429-5224 bp Neighborhood of RT #1 [1429, 5232] RVT-GII GIIM DDE_Tnp_1_assoc YhhI YhhI YhhI YhhI Feature: gene Location: 1429-1602 bp Feature: gene Location: 1667-2041 bp Feature: gene Location: 2390-3889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2843-3500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2843 -3 500 bp Feature: domain Description: GIIM Note: maturase Location: 3584-3794 bp Feature: domain Description: GIIM Note: maturase Location: 3 584-3 794 bp Feature: gene Location: 4096-4227 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4117-4222 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4117-4222 bp Feature: gene Location: 4375-5232 bp Feature: domain Description: YhhI Location: 4378-4462 bp Feature: domain Description: YhhI Location: 43 78-4462 bp Feature: domain Description: YhhI Location: 4519-4873 bp Feature: domain Description: YhhI Location: 4519-4873 bp Feature: domain Description: YhhI Location: 4873-4987 bp Feature: domain Description: YhhI Location: 4873 -4987 bp Feature: domain Description: YhhI Location: 5083-5224 bp Feature: domain Description: YhhI Location: 5083 -5224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)