myRT

myRT report for GCA_013342565.1_ASM1334256v1

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Seq: JABUXE010000155.1 Escherichia coli strain IHIT19679 NODE_155_length_2759_cov_22.835486, whole genome shotgun sequence (2759 bp)
Overview 1 RT 1: 2-2399 bp Neighborhood of RT #1 [2, 2494] RVT-GII GIIM Feature: gene Location: 2-151 bp Feature: gene Location: 272-646 bp Feature: gene Location: 995-1909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448-1892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 448-1 892 bp Feature: gene Location: 2168-2494 bp Feature: domain Description: GIIM Note: maturase Location: 2189-2399 bp Feature: domain Description: GIIM Note: maturase Location: 21 89-2399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABUXE010000156.1 Escherichia coli strain IHIT19679 NODE_156_length_2547_cov_54.275207, whole genome shotgun sequence (2547 bp)
Overview 1 RT 1: 1-2287 bp Neighborhood of RT #1 [1, 2352] RVT-GII GIIM PHA02517 Feature: gene Location: 1-1335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274-1006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 74-1006 bp Feature: domain Description: GIIM Note: maturase Location: 1081-1279 bp Feature: domain Description: GIIM Note: maturase Location: 1081-12 79 bp Feature: gene Location: 1289-1714 bp Feature: gene Location: 1927-2352 bp Feature: domain Description: PHA02517 Location: 1951-2287 bp Feature: domain Description: PHA02 517 Location: 1951-2 2 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JABUXE010000051.1 Escherichia coli strain IHIT19679 NODE_51_length_28681_cov_43.028297, whole genome shotgun sequence (28681 bp)
Overview 1 RT 1: 8588-18602 bp Neighborhood of RT #1 [8588, 18634] YeeA YeeA RVT-UG5 nitrilase YeeA TIGR02687 Feature: gene Location: 8588-10522 bp Feature: domain Description: YeeA Location: 9227-9938 bp Feature: domain Description: YeeA Location: 9227-993 8 bp Feature: domain Description: YeeA Location: 10094-10418 bp Feature: domain Description: YeeA Location: 10094-10418 bp Feature: gene Location: 10545-10946 bp Feature: gene Location: 11027-14026 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11489-11978 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11489-11978 bp Feature: domain Description: nitrilase Location: 13214-13931 bp Feature: domain Description: nitrilase Location: 13 214-13 93 1 bp Feature: gene Location: 14029-15813 bp Feature: domain Description: YeeA Location: 14728-15745 bp Feature: domain Description: YeeA Location: 14728-15745 bp Feature: gene Location: 16031-18634 bp Feature: domain Description: TIGR02687 Location: 16049-18602 bp Feature: domain Description: TIGR02687 Location: 16049-18602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeA (COG1002), RVT-UG5, nitrilase (cl11424), TIGR02687 (TIGR02687 family protein)

Seq: JABUXE010000069.1 Escherichia coli strain IHIT19679 NODE_69_length_20084_cov_86.556346, whole genome shotgun sequence (20084 bp)
Overview 1 RT 1: 13732-17151 bp Neighborhood of RT #1 [13732, 17177] PRK10276 RVT-GII PRiA4_ORF3 PinE Feature: gene Location: 13732-14415 bp Feature: domain Description: PRK10276 Location: 14035-14398 bp Feature: domain Description: PRK10276 Location: 14 035-14 398 bp Feature: gene Location: 14469-15071 bp Feature: gene Location: 15046-15795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15052-15664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15052-15664 bp Feature: gene Location: 15878-16468 bp Feature: domain Description: PRiA4_ORF3 Location: 15884-16379 bp Feature: domain Description: PRiA4 _ORF3 Location: 15884 -16379 bp Feature: gene Location: 16605-17177 bp Feature: domain Description: PinE Location: 16611-17151 bp Feature: domain Description: PinE Location: 16611-17151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PRiA4_ORF3 (pfam07929), PinE (COG1961)