myRT

myRT report for GCA_013343755.1_ASM1334375v1

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Seq: JABTYZ010000017.1 Streptococcus suis strain SC3C3-1 NODE_17_length_56861_cov_156.324, whole genome shotgun sequence (56861 bp)
Overview 1 RT 1: 30382-33944 bp 2 RT 2: 47077-56127 bp Neighborhood of RT #1 [30382, 33944] RVT-GII TraG-D_C Neighborhood of RT #2 [47077, 56858] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 30382-30762 bp Feature: gene Location: 30820-30984 bp Feature: gene Location: 31131-33041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31440-32196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 440-321 96 bp Feature: gene Location: 33052-33684 bp Feature: domain Description: TraG-D_C Location: 33145-33472 bp Feature: domain Description: TraG-D_C Location: 331 45-33472 bp Feature: gene Location: 33702-33944 bp Feature: gene Location: 47077-47628 bp Feature: gene Location: 47678-53119 bp Feature: domain Description: N6_Mtase Location: 49670-50261 bp Feature: domain Description: N6_Mtase Location: 49670-50261 bp Feature: domain Description: COG4646 Location: 50852-52976 bp Feature: domain Description: COG4646 Location: 50852-52976 bp Feature: gene Location: 53617-55395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53878-54670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53878-54670 bp Feature: domain Description: Intron_maturas2 Location: 54775-55006 bp Feature: domain Description: Intron_maturas2 Location: 54775-55006 bp Feature: domain Description: HNHc Note: nucleases Location: 55171-55357 bp Feature: domain Description: HNHc Note: nucleases Location: 551 71 -55357 bp Feature: gene Location: 55533-56858 bp Feature: domain Description: KOG1000 Location: 55812-56127 bp Feature: domain Description: KOG1 000 Location: 5581 2-561 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraG-D_C (pfam12696), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )