myRT

myRT report for GCA_013344185.1_ASM1334418v1

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Seq: JABTZA010000012.1 Streptococcus suis strain SC1B38-1 NODE_12_length_68390_cov_141.281, whole genome shotgun sequence (68390 bp)
Overview 1 RT 1: 30899-34461 bp 2 RT 2: 47594-57763 bp Neighborhood of RT #1 [30899, 34461] RVT-GII TraG-D_C Neighborhood of RT #2 [47594, 57763] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 30899-31279 bp Feature: gene Location: 31337-31501 bp Feature: gene Location: 31648-33558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31957-32713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 957-3271 3 bp Feature: gene Location: 33569-34201 bp Feature: domain Description: TraG-D_C Location: 33662-33989 bp Feature: domain Description: TraG-D_C Location: 33662-33989 bp Feature: gene Location: 34219-34461 bp Feature: gene Location: 47594-48145 bp Feature: gene Location: 48195-53636 bp Feature: domain Description: N6_Mtase Location: 50187-50778 bp Feature: domain Description: N6_Mtase Location: 501 87-50778 bp Feature: domain Description: COG4646 Location: 51369-53493 bp Feature: domain Description: COG4646 Location: 51 369-53493 bp Feature: gene Location: 54134-55912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54395-55187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54395-551 87 bp Feature: domain Description: Intron_maturas2 Location: 55292-55523 bp Feature: domain Description: Intron_maturas2 Location: 55292-55523 bp Feature: domain Description: HNHc Note: nucleases Location: 55688-55874 bp Feature: domain Description: HNHc Note: nucleases Location: 55688-55874 bp Feature: gene Location: 56050-57393 bp Feature: domain Description: KOG1000 Location: 56329-56644 bp Feature: domain Description: KOG1 000 Location: 56329-56644 bp Feature: gene Location: 57464-57763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraG-D_C (pfam12696), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )