myRT

myRT report for GCA_013344335.1_ASM1334433v1

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Seq: JABTZL010000010.1 Streptococcus suis strain F5-1HN NODE_10_length_63899_cov_287.874, whole genome shotgun sequence (63899 bp)
Overview 1 RT 1: 32386-36065 bp Neighborhood of RT #1 [32386, 36067] Aldose_epim_lacX RVT-Retrons RelB_DinJ rpmG Feature: gene Location: 32386-32778 bp Feature: domain Description: Aldose_epim_lacX Location: 32395-32761 bp Feature: domain Description: Aldose_epim_lacX Location: 32395-32761 bp Feature: gene Location: 32824-33762 bp Feature: gene Location: 33800-34540 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33806-34208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33806-34208 bp Feature: gene Location: 34992-35732 bp Feature: domain Description: RelB_DinJ Location: 35001-35169 bp Feature: domain Description: RelB_DinJ Location: 35001 -351 69 bp Feature: gene Location: 35918-36067 bp Feature: domain Description: rpmG Location: 35921-36065 bp Feature: domain Description: rpmG Location: 35921 -36065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aldose_epim_lacX (cd09024), RVT-Retrons, RelB_DinJ (TIGR02384), rpmG (PRK00595)

Seq: JABTZL010000011.1 Streptococcus suis strain F5-1HN NODE_11_length_63396_cov_287.581, whole genome shotgun sequence (63396 bp)
Overview 1 RT 1: 10253-19544 bp Neighborhood of RT #1 [10253, 19552] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF TnpV Feature: gene Location: 10253-10804 bp Feature: gene Location: 10983-16316 bp Feature: domain Description: N6_Mtase Location: 12879-13458 bp Feature: domain Description: N6_Mtase Location: 12 879-13458 bp Feature: domain Description: COG4646 Location: 14052-16158 bp Feature: domain Description: COG4646 Location: 14052 -16158 bp Feature: gene Location: 16814-18592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17075-17867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17075-17867 bp Feature: domain Description: Intron_maturas2 Location: 17972-18203 bp Feature: domain Description: Intron_maturas2 Location: 17972 -182 03 bp Feature: domain Description: HNHc Note: nucleases Location: 18368-18554 bp Feature: domain Description: HNHc Note: nucleases Location: 18368-18554 bp Feature: gene Location: 18730-19197 bp Feature: domain Description: SF2_C_SNF Location: 18973-19120 bp Feature: domain Description: SF2 _C_SNF Location: 18973-1912 0 bp Feature: gene Location: 19178-19552 bp Feature: domain Description: TnpV Location: 19214-19544 bp Feature: domain Description: TnpV Location: 192 14-19544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793), TnpV (pfam14198)

Seq: JABTZL010000013.1 Streptococcus suis strain F5-1HN NODE_13_length_62574_cov_281.689, whole genome shotgun sequence (62574 bp)
Overview 1 RT 1: 14891-20964 bp Neighborhood of RT #1 [14891, 20984] NTP-PPase_u6 thrS RVT-Retrons HisM HisM Feature: gene Location: 14891-15100 bp Feature: domain Description: NTP-PPase_u6 Location: 14897-15071 bp Feature: domain Description: NTP-PPase_u6 Location: 14897-15071 bp Feature: gene Location: 15256-17205 bp Feature: domain Description: thrS Location: 15259-17185 bp Feature: domain Description: thrS Location: 15259-17185 bp Feature: gene Location: 17432-19414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17555-18281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17555-18281 bp Feature: gene Location: 19612-20271 bp Feature: domain Description: HisM Location: 19645-20257 bp Feature: domain Description: HisM Location: 19645-20257 bp Feature: gene Location: 20286-20984 bp Feature: domain Description: HisM Location: 20334-20964 bp Feature: domain Description: HisM Location: 203 3 4-20964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP-PPase_u6 (cd11543), thrS (TIGR00418), RVT-Retrons, HisM (COG0765)