myRT

myRT report for GCA_013344375.1_ASM1334437v1

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Seq: JABTZM010000015.1 Streptococcus suis strain SC4B13 79_R1_(paired)_contig_15, whole genome shotgun sequence (97947 bp)
Overview 1 RT 1: 65949-72267 bp Neighborhood of RT #1 [65949, 72281] RAYT RVT-Retrons valS Feature: gene Location: 65949-66368 bp Feature: domain Description: RAYT Location: 65970-66348 bp Feature: domain Description: RAYT Location: 65970-66348 bp Feature: gene Location: 66475-66693 bp Feature: gene Location: 67007-67942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67121-67682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 671 21 -67682 bp Feature: gene Location: 68169-69542 bp Feature: gene Location: 69630-72281 bp Feature: domain Description: valS Location: 69636-72267 bp Feature: domain Description: valS Location: 69636-72267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-Retrons, valS (TIGR00422)

Seq: JABTZM010000033.1 Streptococcus suis strain SC4B13 79_R1_(paired)_contig_33, whole genome shotgun sequence (3000 bp)
Overview 1 RT 1: 3-2035 bp Neighborhood of RT #1 [3, 2880] RVT-GII Feature: gene Location: 3-218 bp Feature: gene Location: 522-653 bp Feature: gene Location: 970-2880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279-2035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 79-2 035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABTZM010000046.1 Streptococcus suis strain SC4B13 79_R1_(paired)_contig_46, whole genome shotgun sequence (3094 bp)
Overview 1 RT 1: 136-2347 bp Neighborhood of RT #1 [136, 2349] RVT-GII GIIM ArsD Feature: gene Location: 136-1413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 40-955 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1222 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1222 bp Feature: gene Location: 1779-1958 bp Feature: gene Location: 1978-2349 bp Feature: domain Description: ArsD Location: 1981-2347 bp Feature: domain Description: ArsD Location: 1981-23 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ArsD (pfam06953)

Seq: JABTZM010000060.1 Streptococcus suis strain SC4B13 79_R1_(paired)_contig_60, whole genome shotgun sequence (3114 bp)
Overview 1 RT 1: 152-3080 bp Neighborhood of RT #1 [152, 3112] RVT-GII Intron_maturas2 HNHc SF2_C_SNF Feature: gene Location: 152-1963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 16-1238 bp Feature: domain Description: Intron_maturas2 Location: 1307-1760 bp Feature: domain Description: Intron_maturas2 Location: 1307-1760 bp Feature: domain Description: HNHc Note: nucleases Location: 1778-1934 bp Feature: domain Description: HNHc Note: nucleases Location: 1778-1934 bp Feature: gene Location: 2203-2403 bp Feature: gene Location: 2528-3112 bp Feature: domain Description: SF2_C_SNF Location: 2933-3080 bp Feature: domain Description: SF2_C_SNF Location: 2933-3080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF2_C_SNF (cd18793)

Seq: JABTZM010000073.1 Streptococcus suis strain SC4B13 79_R1_(paired)_contig_77, whole genome shotgun sequence (987 bp)
Overview 1 RT 1: 106-592 bp Neighborhood of RT #1 [106, 984] RVT-GII Feature: gene Location: 106-984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-5 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII