myRT

myRT report for GCA_013349775.1_ASM1334977v1

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Seq: DUYZ01000346.1 TPA_asm: Gammaproteobacteria bacterium isolate MAG_00215_gam_020 SI53jan11_120mDRAFT_c1001737, whole genome shotgun sequence (8845 bp)
Overview 1 RT 1: 1-8774 bp Neighborhood of RT #1 [1, 8842] Lon_rel_chp TIGR02687 RVT-UG5 DUF1016_N YhcG_C YeeA Feature: gene Location: 1-1395 bp Feature: domain Description: Lon_rel_chp Location: 31-1396 bp Feature: domain Description: Lon_rel_chp Location: 31 -1 396 bp Feature: gene Location: 1401-4031 bp Feature: domain Description: TIGR02687 Location: 1416-3996 bp Feature: domain Description: TIGR02687 Location: 1 41 6-3996 bp Feature: gene Location: 4035-7097 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4524-5013 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4524-501 3 bp Feature: gene Location: 7090-8217 bp Feature: domain Description: DUF1016_N Location: 7141-7621 bp Feature: domain Description: DUF1 01 6_N Location: 71 41 -7621 bp Feature: domain Description: YhcG_C Location: 7705-8161 bp Feature: domain Description: YhcG_C Location: 7705-81 61 bp Feature: gene Location: 8267-8842 bp Feature: domain Description: YeeA Location: 8279-8774 bp Feature: domain Description: YeeA Location: 8279-8774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lon_rel_chp (TIGR02653), TIGR02687 (TIGR02687 family protein), RVT-UG5, DUF1016_N (pfam17761), YhcG_C, YeeA (COG1002)

Seq: DUYZ01000301.1 TPA_asm: Gammaproteobacteria bacterium isolate MAG_00215_gam_020 SI53jan11_120mDRAFT_c1004252, whole genome shotgun sequence (4645 bp)
Overview 1 RT 1: 1-3282 bp Neighborhood of RT #1 [1, 3293] RVT-GII GIIM PDDEXK_2 Y1_Tnp Bac_DnaA_C Feature: gene Location: 1-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160-814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160-814 bp Feature: domain Description: GIIM Note: maturase Location: 886-1114 bp Feature: domain Description: GIIM Note: maturase Location: 886-1114 bp Feature: gene Location: 1420-2271 bp Feature: domain Description: PDDEXK_2 Location: 1438-2122 bp Feature: domain Description: PDDEXK_2 Location: 1438-2 12 2 bp Feature: gene Location: 2382-3293 bp Feature: domain Description: Y1_Tnp Location: 2418-2745 bp Feature: domain Description: Y1_Tnp Location: 2 418-2 745 bp Feature: domain Description: Bac_DnaA_C Location: 3033-3282 bp Feature: domain Description: Bac_DnaA_C Location: 3033-32 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PDDEXK_2 (pfam12784), Y1_Tnp (pfam01797), Bac_DnaA_C (smart00760)

Seq: DUYZ01000296.1 TPA_asm: Gammaproteobacteria bacterium isolate MAG_00215_gam_020 SI53jan11_120mDRAFT_c1006857, whole genome shotgun sequence (3237 bp)
Overview 1 RT 1: 3-3232 bp Neighborhood of RT #1 [3, 3234] DUF1566 Avd_like RVT-DGRs DUF1566 Feature: gene Location: 3-653 bp Feature: domain Description: DUF1566 Location: 180-642 bp Feature: domain Description: DUF1566 Location: 180-642 bp Feature: gene Location: 676-1068 bp Feature: domain Description: Avd_like Location: 703-1015 bp Feature: domain Description: Avd_like Location: 703 -1015 bp Feature: gene Location: 1283-2818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1523-2255 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1523 -2255 bp Feature: gene Location: 2842-3234 bp Feature: domain Description: DUF1566 Location: 2977-3232 bp Feature: domain Description: DUF1566 Location: 2977-3 23 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: DUYZ01000137.1 TPA_asm: Gammaproteobacteria bacterium isolate MAG_00215_gam_020 SI53jan11_120mDRAFT_c1008586, whole genome shotgun sequence (2717 bp)
Overview 1 RT 1: 1-2617 bp Neighborhood of RT #1 [1, 2715] DUF1566 RVT-DGRs Avd_like Feature: gene Location: 1-456 bp Feature: domain Description: DUF1566 Location: 127-451 bp Feature: domain Description: DUF1566 Location: 127-4 51 bp Feature: gene Location: 453-2093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 705-1428 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 705-14 28 bp Feature: gene Location: 2224-2715 bp Feature: domain Description: Avd_like Location: 2305-2617 bp Feature: domain Description: Avd_like Location: 2305-2617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: DUYZ01000409.1 TPA_asm: Gammaproteobacteria bacterium isolate MAG_00215_gam_020 SI53jan11_120mDRAFT_c1010521, whole genome shotgun sequence (2313 bp)
Overview 1 RT 1: 276-2268 bp Neighborhood of RT #1 [276, 2312] RVT-GII GIIM FlaA1 Feature: gene Location: 276-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531-1188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 31-1188 bp Feature: domain Description: GIIM Note: maturase Location: 1266-1494 bp Feature: domain Description: GIIM Note: maturase Location: 1266-1494 bp Feature: gene Location: 1701-1853 bp Feature: gene Location: 2046-2312 bp Feature: domain Description: FlaA1 Location: 2052-2268 bp Feature: domain Description: FlaA1 Location: 205 2-2268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FlaA1 (COG1086)