myRT

myRT report for GCA_013350575.1_ASM1335057v1

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Seq: SNMT01000025.1 Salmonella sp. SG203 contig00025, whole genome shotgun sequence (66236 bp)
Overview 1 RT 1: 2290-6424 bp 2 RT 2: 61800-66072 bp Neighborhood of RT #1 [2290, 7488] PRK13732 RVT-GII RVT-GII GIIM DUF905 Spo0J Neighborhood of RT #2 [61800, 66095] TnpB_IS66 RVT_N RVT-GII RVT-GII GIIM HNHc LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 2290-2493 bp Feature: gene Location: 2524-3087 bp Feature: domain Description: PRK13732 Location: 2527-3085 bp Feature: domain Description: PRK1 3732 Location: 2527-3085 bp Feature: gene Location: 3647-4456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3950-4454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3950-4454 bp Feature: gene Location: 4459-4992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4468-4591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4468-4591 bp Feature: domain Description: GIIM Note: maturase Location: 4663-4885 bp Feature: domain Description: GIIM Note: maturase Location: 4663-4885 bp Feature: gene Location: 5155-5397 bp Feature: domain Description: DUF905 Location: 5185-5389 bp Feature: domain Description: DUF905 Location: 51 85-5389 bp Feature: gene Location: 5464-7488 bp Feature: domain Description: Spo0J Location: 5584-6424 bp Feature: domain Description: Spo0J Location: 5584-6424 bp Feature: gene Location: 61800-62126 bp Feature: domain Description: TnpB_IS66 Location: 61827-62115 bp Feature: domain Description: TnpB_IS66 Location: 61 827-621 1 5 bp Feature: gene Location: 62318-62458 bp Feature: gene Location: 62790-63584 bp Feature: domain Description: RVT_N Location: 62796-63000 bp Feature: domain Description: RVT_N Location: 62796-63000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63045-63411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63045-6341 1 bp Feature: gene Location: 63626-64381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63632-63683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63632-63683 bp Feature: domain Description: GIIM Note: maturase Location: 63740-63974 bp Feature: domain Description: GIIM Note: maturase Location: 63740-63974 bp Feature: domain Description: HNHc Note: nucleases Location: 64187-64346 bp Feature: domain Description: HNHc Note: nucleases Location: 641 87-64346 bp Feature: gene Location: 64524-66095 bp Feature: domain Description: LZ_Tnp_IS66 Location: 64662-64887 bp Feature: domain Description: LZ_Tnp_IS66 Location: 64662-64887 bp Feature: domain Description: zf-IS66 Location: 64908-65040 bp Feature: domain Description: zf-IS66 Location: 64908-65040 bp Feature: domain Description: DDE_Tnp_IS66 Location: 65085-65940 bp Feature: domain Description: DDE_Tnp_IS66 Location: 65085-65940 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 65961-66072 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 65961 -66072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, GIIM (pfam08388), DUF905 (pfam06006), Spo0J (COG1475), TnpB_IS66 (pfam05717), RVT_N (pfam13655), HNHc (smart00507), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: SNMT01000036.1 Salmonella sp. SG203 contig00036, whole genome shotgun sequence (29462 bp)
Overview 1 RT 1: 20403-23240 bp Neighborhood of RT #1 [20403, 23240] IS285 IS285 RVT-GII GIIM Feature: gene Location: 20403-20813 bp Feature: domain Description: IS285 Location: 20433-20805 bp Feature: domain Description: IS2 85 Location: 2 0433-2 0805 bp Feature: gene Location: 20813-21463 bp Feature: domain Description: IS285 Location: 20816-21440 bp Feature: domain Description: IS2 85 Location: 2 0816-2 1440 bp Feature: gene Location: 21597-22241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21621-21813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 162 1-2 1813 bp Feature: domain Description: GIIM Note: maturase Location: 21867-22101 bp Feature: domain Description: GIIM Note: maturase Location: 2 1867-2 2 101 bp Feature: gene Location: 22258-22683 bp Feature: gene Location: 22725-23240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388)