myRT

myRT report for GCA_013358925.1_ASM1335892v1

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Seq: WNTP01000012.1 Escherichia coli strain MEX-18 scaffold12_size133719, whole genome shotgun sequence (134395 bp)
Overview 1 RT 1: 42547-47184 bp Neighborhood of RT #1 [42547, 47184] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 42547-42762 bp Feature: gene Location: 42853-43134 bp Feature: domain Description: HTH_XRE Location: 42868-43033 bp Feature: domain Description: HTH_XRE Location: 42868-43033 bp Feature: gene Location: 43127-44227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43268-43820 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43268-43820 bp Feature: gene Location: 44304-45806 bp Feature: domain Description: PRK13889 Location: 44307-44886 bp Feature: domain Description: PRK1 3889 Location: 44307-44886 bp Feature: gene Location: 46747-47184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: WNTP01000001.1 Escherichia coli strain MEX-18 scaffold1_size842463, whole genome shotgun sequence (846654 bp)
Overview 1 RT 1: 842953-846586 bp Neighborhood of RT #1 [842953, 846651] TagG PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 842953-843531 bp Feature: domain Description: TagG Location: 842965-843496 bp Feature: domain Description: TagG Location: 842 965-843496 bp Feature: gene Location: 843534-843980 bp Feature: domain Description: PHA02517 Location: 843537-843978 bp Feature: domain Description: PHA02 517 Location: 843537-843978 bp Feature: gene Location: 844097-845620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844370-845096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844370-845096 bp Feature: domain Description: GIIM Note: maturase Location: 845177-845375 bp Feature: domain Description: GIIM Note: maturase Location: 845177-845375 bp Feature: gene Location: 845914-846231 bp Feature: gene Location: 846454-846651 bp Feature: domain Description: PHA02517 Location: 846457-846586 bp Feature: domain Description: PHA02 517 Location: 846457-846586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TagG (COG1682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: WNTP01000031.1 Escherichia coli strain MEX-18 scaffold31_size14808, whole genome shotgun sequence (14808 bp)
Overview 1 RT 1: 6369-9740 bp Neighborhood of RT #1 [6369, 9745] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 6369-6566 bp Feature: domain Description: PRK09413 Location: 6372-6534 bp Feature: domain Description: PRK09413 Location: 63 72-653 4 bp Feature: gene Location: 6621-6971 bp Feature: gene Location: 7042-8388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7363-7975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 63 -7975 bp Feature: domain Description: GIIM Note: maturase Location: 8023-8254 bp Feature: domain Description: GIIM Note: maturase Location: 8023 -8254 bp Feature: gene Location: 8597-8998 bp Feature: gene Location: 9098-9745 bp Feature: domain Description: PinE Location: 9191-9740 bp Feature: domain Description: PinE Location: 9191-9740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: WNTP01000048.1 Escherichia coli strain MEX-18 scaffold49_size2712, whole genome shotgun sequence (2712 bp)
Overview 1 RT 1: 3-2615 bp Neighborhood of RT #1 [3, 2710] PRK13729 RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 3-380 bp Feature: domain Description: PRK13729 Location: 48-381 bp Feature: domain Description: PRK13729 Location: 4 8-381 bp Feature: gene Location: 387-1973 bp Feature: RT Description: RVT_N Location: 393-591 bp Feature: RT Description: RVT_N Location: 393-591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 2-1284 bp Feature: domain Description: GIIM Note: maturase Location: 1335-1569 bp Feature: domain Description: GIIM Note: maturase Location: 1335-1569 bp Feature: domain Description: HNHc Note: nucleases Location: 1779-1938 bp Feature: domain Description: HNHc Note: nucleases Location: 1779-1938 bp Feature: gene Location: 2318-2710 bp Feature: domain Description: AdoMet_MTases Location: 2324-2615 bp Feature: domain Description: AdoMet_MTases Location: 2324 -2615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), PRK13729 (conjugal transfer pilus assembly protein TraB; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)