myRT

myRT report for GCA_013359015.1_ASM1335901v1

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Seq: WNTU01000033.1 Escherichia coli strain MEX-13 scaffold33_size44384, whole genome shotgun sequence (45500 bp)
Overview 1 RT 1: 21404-24754 bp Neighborhood of RT #1 [21404, 24786] PinE RVT-GII GIIM PRK09413 Feature: gene Location: 21404-22051 bp Feature: domain Description: PinE Location: 21497-22046 bp Feature: domain Description: PinE Location: 21 497-22046 bp Feature: gene Location: 22151-22552 bp Feature: gene Location: 22761-24113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23082-23700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23082-23700 bp Feature: domain Description: GIIM Note: maturase Location: 23748-23979 bp Feature: domain Description: GIIM Note: maturase Location: 23748-23979 bp Feature: gene Location: 24184-24534 bp Feature: gene Location: 24589-24786 bp Feature: domain Description: PRK09413 Location: 24592-24754 bp Feature: domain Description: PRK0941 3 Location: 24592-24754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: WNTU01000047.1 Escherichia coli strain MEX-13 scaffold47_size22037, whole genome shotgun sequence (22037 bp)
Overview 1 RT 1: 17178-21777 bp Neighborhood of RT #1 [17178, 21842] FimD PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 17178-18326 bp Feature: domain Description: FimD Location: 17232-18324 bp Feature: domain Description: FimD Location: 172 32 -1832 4 bp Feature: gene Location: 18739-19185 bp Feature: domain Description: PHA02517 Location: 18742-19183 bp Feature: domain Description: PHA02 517 Location: 18742 -19183 bp Feature: gene Location: 19302-20825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19575-20307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19575-2 0307 bp Feature: domain Description: GIIM Note: maturase Location: 20382-20580 bp Feature: domain Description: GIIM Note: maturase Location: 2 0382 -2 0580 bp Feature: gene Location: 20779-21204 bp Feature: gene Location: 21417-21842 bp Feature: domain Description: PHA02517 Location: 21441-21777 bp Feature: domain Description: PHA02 517 Location: 2 1441-2 1777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimD (COG3188), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)