myRT

myRT report for GCA_013359145.1_ASM1335914v1

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Seq: WNTY01000015.1 Escherichia coli strain MEX-9 scaffold15_size148284, whole genome shotgun sequence (148284 bp)
Overview 1 RT 1: 3-3345 bp Neighborhood of RT #1 [3, 3395] RVT-GII GIIM PHA02517 zinc_ribbon_11 Feature: gene Location: 3-347 bp Feature: gene Location: 641-2164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914-1646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 4-1 646 bp Feature: domain Description: GIIM Note: maturase Location: 1721-1919 bp Feature: domain Description: GIIM Note: maturase Location: 1 721 -1 91 9 bp Feature: gene Location: 2293-2733 bp Feature: domain Description: PHA02517 Location: 2296-2698 bp Feature: domain Description: PHA0251 7 Location: 2296-2698 bp Feature: gene Location: 2985-3395 bp Feature: domain Description: zinc_ribbon_11 Location: 3027-3345 bp Feature: domain Description: zinc_ribbon_1 1 Location: 3027-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), zinc_ribbon_11 (pfam11682)

Seq: WNTY01000023.1 Escherichia coli strain MEX-9 scaffold23_size113322, whole genome shotgun sequence (113322 bp)
Overview 1 RT 1: 6216-9516 bp 2 RT 2: 26186-30200 bp Neighborhood of RT #1 [6216, 9557] RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [26186, 30202] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66_C Dps Feature: gene Location: 6216-6893 bp Feature: gene Location: 7188-7385 bp Feature: gene Location: 7411-8643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612-8266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7612 -82 66 bp Feature: domain Description: GIIM Note: maturase Location: 8344-8566 bp Feature: domain Description: GIIM Note: maturase Location: 8344-8566 bp Feature: gene Location: 8638-9057 bp Feature: gene Location: 9105-9557 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9135-9516 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9135-9516 bp Feature: gene Location: 26186-27721 bp Feature: domain Description: COG4584 Location: 26267-27059 bp Feature: domain Description: COG4584 Location: 2 62 67-2 7059 bp Feature: domain Description: COG4584 Location: 27179-27587 bp Feature: domain Description: COG4584 Location: 2 7179-2 7587 bp Feature: gene Location: 27738-28493 bp Feature: domain Description: IstB_IS21_ATP Location: 27810-27894 bp Feature: domain Description: IstB_IS2 1_ATP Location: 2 7810-2 7894 bp Feature: domain Description: IstB_IS21 Location: 27903-28428 bp Feature: domain Description: IstB_IS2 1 Location: 2 7903-2 842 8 bp Feature: gene Location: 28635-29684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28653-29307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8653-2 9307 bp Feature: domain Description: GIIM Note: maturase Location: 29385-29610 bp Feature: domain Description: GIIM Note: maturase Location: 2 9385-2 9610 bp Feature: gene Location: 29800-29946 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 29812-29923 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 9812 -2 992 3 bp Feature: gene Location: 30038-30202 bp Feature: domain Description: Dps Location: 30041-30200 bp Feature: domain Description: Dps Location: 30041-302 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783)

Seq: WNTY01000008.1 Escherichia coli strain MEX-9 scaffold8_size357500, whole genome shotgun sequence (358492 bp)
Overview 1 RT 1: 156066-163767 bp Neighborhood of RT #1 [156066, 163904] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 156066-157319 bp Feature: domain Description: proA Location: 156093-157284 bp Feature: domain Description: proA Location: 156093 -157284 bp Feature: gene Location: 157873-158343 bp Feature: gene Location: 158690-161899 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 159218-159707 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 159218-159707 bp Feature: domain Description: nitrilase Location: 161213-161810 bp Feature: domain Description: nitrilase Location: 161213 -161810 bp Feature: gene Location: 162194-162997 bp Feature: domain Description: AbiEi_3_N Location: 162227-162488 bp Feature: domain Description: AbiEi_3 _N Location: 162227-162488 bp Feature: domain Description: AbiEi_3 Location: 162500-162956 bp Feature: domain Description: AbiEi_3 Location: 162500-162956 bp Feature: gene Location: 162984-163904 bp Feature: domain Description: AbiEii Location: 163026-163767 bp Feature: domain Description: AbiEii Location: 163 026-163 767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: WNTY01000009.1 Escherichia coli strain MEX-9 scaffold9_size204613, whole genome shotgun sequence (204613 bp)
Overview 1 RT 1: 24686-27741 bp Neighborhood of RT #1 [24686, 27741] RVT-GII RVT-GII GIIM Feature: gene Location: 24686-25591 bp Feature: gene Location: 25729-25920 bp Feature: gene Location: 26077-26616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26407-26485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264 07-264 85 bp Feature: gene Location: 26644-27165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26650-26932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26650-26932 bp Feature: domain Description: GIIM Note: maturase Location: 26980-27160 bp Feature: domain Description: GIIM Note: maturase Location: 26980-27160 bp Feature: gene Location: 27264-27443 bp Feature: gene Location: 27553-27741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)