myRT

myRT report for GCA_013359215.1_ASM1335921v1

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Seq: JABWCH010000247.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_10431, whole genome shotgun sequence (8380 bp)
Overview 1 RT 1: 2175-6486 bp Neighborhood of RT #1 [2175, 6486] polynuc_phos S15_bact RVT-Retrons Feature: gene Location: 2175-4292 bp Feature: domain Description: polynuc_phos Location: 2217-4266 bp Feature: domain Description: polynuc_phos Location: 221 7-4266 bp Feature: gene Location: 4398-4670 bp Feature: domain Description: S15_bact Location: 4419-4668 bp Feature: domain Description: S1 5_bact Location: 441 9-4668 bp Feature: gene Location: 4812-5999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5121-5709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 21 -5709 bp Feature: gene Location: 6011-6145 bp Feature: gene Location: 6259-6486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT polynuc_phos (TIGR03591), S15_bact (TIGR00952), RVT-Retrons

Seq: JABWCH010000034.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_2131, whole genome shotgun sequence (30490 bp)
Overview 1 RT 1: 1-4471 bp Neighborhood of RT #1 [1, 6660] Rhs_assc_core RVT-GII group_II_RT_mat dnaG Feature: gene Location: 1-801 bp Feature: domain Description: Rhs_assc_core Location: 13-145 bp Feature: domain Description: Rhs_assc_core Location: 13-145 bp Feature: gene Location: 1407-1595 bp Feature: gene Location: 1860-2552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2154-2541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 154-2 541 bp Feature: gene Location: 3042-3953 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3054-3420 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3054-342 0 bp Feature: gene Location: 4147-6660 bp Feature: domain Description: dnaG Location: 4156-4471 bp Feature: domain Description: dnaG Location: 4156-4471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), RVT-GII, group_II_RT_mat (TIGR04416), dnaG (TIGR01391)

Seq: JABWCH010000441.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_31329, whole genome shotgun sequence (5254 bp)
Overview 1 RT 1: 189-3182 bp Neighborhood of RT #1 [189, 3199] Avd_like RVT-DGRs COG1669 COG2361 Feature: gene Location: 189-575 bp Feature: domain Description: Avd_like Location: 216-525 bp Feature: domain Description: Avd_like Location: 216-525 bp Feature: gene Location: 669-854 bp Feature: gene Location: 1071-2537 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1251-1941 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1251-1941 bp Feature: gene Location: 2569-2874 bp Feature: domain Description: COG1669 Location: 2620-2845 bp Feature: domain Description: COG1669 Location: 2620-2845 bp Feature: gene Location: 2852-3199 bp Feature: domain Description: COG2361 Location: 2873-3182 bp Feature: domain Description: COG23 61 Location: 2873 -3 182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, COG1669 (Predicted nucleotidyltransferase ), COG2361 (Uncharacterized conserved protein, contains HEPN domain )

Seq: JABWCH010000448.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_32720, whole genome shotgun sequence (6846 bp)
Overview 1 RT 1: 165-3494 bp Neighborhood of RT #1 [165, 3494] RVT-CRISPR COG4951 Cas1_I-II-III Feature: gene Location: 165-2231 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 369-975 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 369-975 bp Feature: domain Description: COG4951 Location: 1248-1800 bp Feature: domain Description: COG4 951 Location: 124 8-1800 bp Feature: gene Location: 2244-3245 bp Feature: domain Description: Cas1_I-II-III Location: 2256-3189 bp Feature: domain Description: Cas1_I-II-III Location: 2256-3189 bp Feature: gene Location: 3327-3494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, COG4951 (Uncharacterized protein ), Cas1_I-II-III (cl00656)

Seq: JABWCH010000450.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_32802, whole genome shotgun sequence (4117 bp)
Overview 1 RT 1: 2-3007 bp Neighborhood of RT #1 [2, 3024] RVT-DGRs Avd_like Feature: gene Location: 2-631 bp Feature: gene Location: 1043-2050 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1253-1844 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 125 3-1844 bp Feature: gene Location: 1985-2407 bp Feature: gene Location: 2674-3024 bp Feature: domain Description: Avd_like Location: 2698-3007 bp Feature: domain Description: Avd_like Location: 2698-3007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: JABWCH010000489.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_43079, whole genome shotgun sequence (2899 bp)
Overview 1 RT 1: 1236-2669 bp Neighborhood of RT #1 [1236, 2896] Avd_like RVT-DGRs Feature: gene Location: 1236-1370 bp Feature: gene Location: 1384-1722 bp Feature: domain Description: Avd_like Location: 1402-1711 bp Feature: domain Description: Avd_like Location: 1402-1711 bp Feature: gene Location: 1688-2896 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2015-2669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2015-26 6 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JABWCH010000118.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_4561, whole genome shotgun sequence (14700 bp)
Overview 1 RT 1: 11897-14658 bp Neighborhood of RT #1 [11897, 14699] RVT-DGRs Avd_like HRDC Feature: gene Location: 11897-12076 bp Feature: gene Location: 12100-12459 bp Feature: gene Location: 12813-13829 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13026-13623 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13026-13623 bp Feature: gene Location: 13826-14170 bp Feature: domain Description: Avd_like Location: 13856-14156 bp Feature: domain Description: Avd_like Location: 13856-14156 bp Feature: gene Location: 14163-14699 bp Feature: domain Description: HRDC Location: 14466-14658 bp Feature: domain Description: HRDC Location: 14466-14658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: JABWCH010000198.1 Candidatus Brocadiae bacterium isolate MAG_51 scaffold_8242, whole genome shotgun sequence (13976 bp)
Overview 1 RT 1: 1139-9976 bp Neighborhood of RT #1 [1139, 9976] YfmG HRDC RVT-DGRs Feature: gene Location: 1139-4078 bp Feature: domain Description: YfmG Location: 3314-4058 bp Feature: domain Description: YfmG Location: 3314-4058 bp Feature: gene Location: 4396-5094 bp Feature: domain Description: HRDC Location: 4696-4894 bp Feature: domain Description: HRDC Location: 4696-48 94 bp Feature: gene Location: 5429-6481 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5666-6260 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5666-6260 bp Feature: gene Location: 6836-8746 bp Feature: gene Location: 8762-9976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs