myRT

myRT report for GCA_013359385.1_ASM1335938v1

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Seq: JABWBX010000417.1 Candidate division KSB1 bacterium isolate MAG_41 scaffold_21500, whole genome shotgun sequence (4951 bp)
Overview 1 RT 1: 1234-4206 bp Neighborhood of RT #1 [1234, 4235] Avd_like RVT-DGRs PRK10302 Feature: gene Location: 1234-1593 bp Feature: domain Description: Avd_like Location: 1267-1570 bp Feature: domain Description: Avd_like Location: 1 267-1 570 bp Feature: gene Location: 1928-2077 bp Feature: gene Location: 2112-3155 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2322-2961 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2322-2961 bp Feature: gene Location: 3177-3353 bp Feature: gene Location: 3360-4235 bp Feature: domain Description: PRK10302 Location: 3384-4206 bp Feature: domain Description: PRK1 0302 Location: 3384-4206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, PRK10302 (hypothetical protein; Provisional)

Seq: JABWBX010000575.1 Candidate division KSB1 bacterium isolate MAG_41 scaffold_31850, whole genome shotgun sequence (3678 bp)
Overview 1 RT 1: 2-2547 bp Neighborhood of RT #1 [2, 2582] RVT-GII GIIM UgpE UgpA Feature: gene Location: 2-574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-197 bp Feature: domain Description: GIIM Note: maturase Location: 260-491 bp Feature: domain Description: GIIM Note: maturase Location: 2 60-491 bp Feature: gene Location: 709-1572 bp Feature: domain Description: UgpE Location: 757-1561 bp Feature: domain Description: UgpE Location: 757-1561 bp Feature: gene Location: 1569-2582 bp Feature: domain Description: UgpA Location: 1686-2547 bp Feature: domain Description: UgpA Location: 1686-2 547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), UgpE (COG0395), UgpA (COG1175)

Seq: JABWBX010000594.1 Candidate division KSB1 bacterium isolate MAG_41 scaffold_34101, whole genome shotgun sequence (3488 bp)
Overview 1 RT 1: 42-3485 bp Neighborhood of RT #1 [42, 3485] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Feature: gene Location: 42-323 bp Feature: domain Description: Cas2_I_II_III Location: 60-276 bp Feature: domain Description: Cas2_I_II_III Location: 60-276 bp Feature: gene Location: 497-1480 bp Feature: domain Description: Cas1_I-II-III Location: 506-1445 bp Feature: domain Description: Cas1_I-II-III Location: 506-1445 bp Feature: gene Location: 1614-2486 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1833-2448 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 183 3 -2448 bp Feature: gene Location: 2823-3485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR

Seq: JABWBX010000729.1 Candidate division KSB1 bacterium isolate MAG_41 scaffold_45698, whole genome shotgun sequence (4730 bp)
Overview 1 RT 1: 1-2659 bp Neighborhood of RT #1 [1, 2673] RVT-DGRs Avd_like pfam03781 Feature: gene Location: 1-165 bp Feature: gene Location: 208-1266 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 418-1057 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 18-1057 bp Feature: gene Location: 1334-1696 bp Feature: domain Description: Avd_like Location: 1358-1667 bp Feature: domain Description: Avd_like Location: 1358-1667 bp Feature: gene Location: 1783-2673 bp Feature: domain Description: pfam03781 Location: 1876-2659 bp Feature: domain Description: pfam03781 Location: 1876-2659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1)

Seq: JABWBX010000189.1 Candidate division KSB1 bacterium isolate MAG_41 scaffold_9071, whole genome shotgun sequence (9257 bp)
Overview 1 RT 1: 2042-4628 bp Neighborhood of RT #1 [2042, 4861] Avd_like RVT-DGRs HNHc Feature: gene Location: 2042-2383 bp Feature: domain Description: Avd_like Location: 2063-2369 bp Feature: domain Description: Avd_like Location: 2063-2369 bp Feature: gene Location: 2380-2691 bp Feature: gene Location: 2899-4008 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3166-3805 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3166-3805 bp Feature: gene Location: 4044-4442 bp Feature: gene Location: 4439-4861 bp Feature: domain Description: HNHc Note: nucleases Location: 4463-4628 bp Feature: domain Description: HNHc Note: nucleases Location: 4463-4628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HNHc (smart00507)