myRT

myRT report for GCA_013359645.1_ASM1335964v1

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Seq: JABFMS010000003.1 Pseudomonas brassicacearum strain C2F7 NODE_3_length_261283_cov_41.976216, whole genome shotgun sequence (261283 bp)
Overview 1 RT 1: 34316-40734 bp Neighborhood of RT #1 [34316, 41102] TIR_2 RVT-UG12 DEXDc_RapA PRK04914 Feature: gene Location: 34316-34990 bp Feature: domain Description: TIR_2 Location: 34511-34823 bp Feature: domain Description: TIR_2 Location: 3451 1 -34823 bp Feature: gene Location: 35319-35486 bp Feature: gene Location: 36066-37790 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 36402-36858 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 36402-36858 bp Feature: gene Location: 38067-38201 bp Feature: gene Location: 38271-41102 bp Feature: domain Description: DEXDc_RapA Location: 38760-39330 bp Feature: domain Description: DEXDc_RapA Location: 38760-39330 bp Feature: domain Description: PRK04914 Location: 39753-40734 bp Feature: domain Description: PRK0491 4 Location: 39753-40734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), RVT-UG12, DEXDc_RapA (cd18011), PRK04914 (RNA polymerase-associated protein RapA)

Seq: JABFMS010000007.1 Pseudomonas brassicacearum strain C2F7 NODE_7_length_170202_cov_59.332695, whole genome shotgun sequence (170202 bp)
Overview 1 RT 1: 131267-139349 bp Neighborhood of RT #1 [131267, 139363] PRK10770 LptD RVT_N RVT-GII GIIM HNH COG3178 Feature: gene Location: 131267-132547 bp Feature: domain Description: PRK10770 Location: 131306-132515 bp Feature: domain Description: PRK10770 Location: 131306-132 515 bp Feature: gene Location: 132564-135362 bp Feature: domain Description: LptD Location: 132999-135345 bp Feature: domain Description: LptD Location: 132 999-135345 bp Feature: gene Location: 135518-137215 bp Feature: domain Description: RVT_N Location: 135575-135815 bp Feature: domain Description: RVT_N Location: 135575-135815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135863-136499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135863-136499 bp Feature: domain Description: GIIM Note: maturase Location: 136550-136784 bp Feature: domain Description: GIIM Note: maturase Location: 136550-136784 bp Feature: domain Description: HNH Note: nucleases Location: 137036-137174 bp Feature: domain Description: HNH Note: nucleases Location: 137036-137174 bp Feature: gene Location: 137638-137781 bp Feature: gene Location: 138338-139363 bp Feature: domain Description: COG3178 Location: 138356-139349 bp Feature: domain Description: COG3178 Location: 138356-139349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )