myRT

myRT report for GCA_013360465.1_ASM1336046v1

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Seq: JABWBO010000041.1 Anaerolineae bacterium isolate MAG_32 scaffold_1167, whole genome shotgun sequence (32826 bp)
Overview 1 RT 1: 3663-10895 bp Neighborhood of RT #1 [3663, 10895] RepB_primase DEXDc_RapA DEXDc_RapA KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3663-4625 bp Feature: domain Description: RepB_primase Location: 3939-4197 bp Feature: domain Description: RepB_primase Location: 3939-41 97 bp Feature: gene Location: 4630-7233 bp Feature: domain Description: DEXDc_RapA Location: 4792-4945 bp Feature: domain Description: DEXDc_RapA Location: 4792-4945 bp Feature: domain Description: DEXDc_RapA Location: 5320-5521 bp Feature: domain Description: DEXDc_RapA Location: 5320-5521 bp Feature: domain Description: KOG1000 Location: 6262-6535 bp Feature: domain Description: KOG1 000 Location: 6262-6535 bp Feature: gene Location: 7252-9063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7513-8311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 751 3-831 1 bp Feature: domain Description: Intron_maturas2 Location: 8449-8680 bp Feature: domain Description: Intron_maturas2 Location: 8449-8680 bp Feature: domain Description: HNHc Note: nucleases Location: 8851-9022 bp Feature: domain Description: HNHc Note: nucleases Location: 8851 -9022 bp Feature: gene Location: 9288-9479 bp Feature: gene Location: 9585-10895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RepB_primase (pfam16793), DEXDc_RapA (cd18011), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABWBO010000193.1 Anaerolineae bacterium isolate MAG_32 scaffold_20006, whole genome shotgun sequence (5228 bp)
Overview 1 RT 1: 873-4903 bp Neighborhood of RT #1 [873, 5103] LpqC LpqC Avd_like RVT-DGRs Feature: gene Location: 873-2684 bp Feature: domain Description: LpqC Location: 882-1806 bp Feature: domain Description: LpqC Location: 882 -1806 bp Feature: domain Description: LpqC Location: 1842-2676 bp Feature: domain Description: LpqC Location: 1842 -2 676 bp Feature: gene Location: 3698-4048 bp Feature: domain Description: Avd_like Location: 3737-4043 bp Feature: domain Description: Avd_like Location: 3737-4043 bp Feature: gene Location: 4045-5103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4252-4903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42 52 -4903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LpqC (COG3509), Avd_like (cd16376), RVT-DGRs

Seq: JABWBO010000217.1 Anaerolineae bacterium isolate MAG_32 scaffold_37540, whole genome shotgun sequence (3229 bp)
Overview 1 RT 1: 495-3066 bp Neighborhood of RT #1 [495, 3066] RVT-GII GIIM Feature: gene Location: 495-2312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-1632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 798-163 2 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1899 bp Feature: gene Location: 2309-2527 bp Feature: gene Location: 2593-3066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABWBO010000222.1 Anaerolineae bacterium isolate MAG_32 scaffold_40782, whole genome shotgun sequence (3033 bp)
Overview 1 RT 1: 964-2402 bp Neighborhood of RT #1 [964, 2671] DUF5615 COG2442 RVT-DGRs Feature: gene Location: 964-1233 bp Feature: domain Description: DUF5615 Location: 973-1105 bp Feature: domain Description: DUF5615 Location: 973-1105 bp Feature: gene Location: 1248-1559 bp Feature: domain Description: COG2442 Location: 1308-1461 bp Feature: domain Description: COG24 4 2 Location: 1308-14 61 bp Feature: gene Location: 1682-2671 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1754-2402 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1754 -24 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5615 (pfam18480), COG2442 (Uncharacterized conserved protein, DUF433 family ), RVT-DGRs

Seq: JABWBO010000151.1 Anaerolineae bacterium isolate MAG_32 scaffold_9204, whole genome shotgun sequence (9166 bp)
Overview 1 RT 1: 50-3132 bp Neighborhood of RT #1 [50, 3197] Der RVT-CRISPR Cas1_I-II-III DUF370 Feature: gene Location: 50-1009 bp Feature: domain Description: Der Location: 350-479 bp Feature: domain Description: Der Location: 35 0-479 bp Feature: gene Location: 1029-1910 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1236-1839 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1236-1839 bp Feature: gene Location: 1907-2917 bp Feature: domain Description: Cas1_I-II-III Location: 1916-2882 bp Feature: domain Description: Cas1_I-II-III Location: 1916-2882 bp Feature: gene Location: 2928-3197 bp Feature: domain Description: DUF370 Location: 2946-3132 bp Feature: domain Description: DUF370 Location: 2946-3132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Der (COG1160), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF370 (pfam04025)