myRT

myRT report for GCA_013360885.1_ASM1336088v1

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Seq: JABWAR010000005.1 Candidatus Jettenia caeni isolate MAG_9 scaffold_1268, whole genome shotgun sequence (69625 bp)
Overview 1 RT 1: 17166-21316 bp Neighborhood of RT #1 [17166, 21342] COG2442 DUF5615 RVT-CRISPR GIIM Cas1_I-II-III PIN_MT3492-like Feature: gene Location: 17166-17408 bp Feature: domain Description: COG2442 Location: 17172-17379 bp Feature: domain Description: COG2442 Location: 1 71 72-1 7379 bp Feature: gene Location: 17414-17791 bp Feature: domain Description: DUF5615 Location: 17426-17648 bp Feature: domain Description: DUF561 5 Location: 1 7426-1 7648 bp Feature: gene Location: 18024-20339 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 18234-18858 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 8234-1 8858 bp Feature: domain Description: GIIM Note: maturase Location: 18909-19107 bp Feature: domain Description: GIIM Note: maturase Location: 1 8909-1 91 07 bp Feature: domain Description: Cas1_I-II-III Location: 19335-20301 bp Feature: domain Description: Cas1 _I-II-III Location: 1 9335-20301 bp Feature: gene Location: 20454-20702 bp Feature: gene Location: 20905-21342 bp Feature: domain Description: PIN_MT3492-like Location: 20914-21316 bp Feature: domain Description: PIN_MT3492-like Location: 2091 4-21 31 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2442 (Uncharacterized conserved protein, DUF433 family ), DUF5615 (pfam18480), RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656), PIN_MT3492-like (cd09874)

Seq: JABWAR010000012.1 Candidatus Jettenia caeni isolate MAG_9 scaffold_2002, whole genome shotgun sequence (26120 bp)
Overview 1 RT 1: 19623-22410 bp Neighborhood of RT #1 [19623, 22415] INT_Rci_Hp1_C RVT-GII COG4190 Feature: gene Location: 19623-19796 bp Feature: gene Location: 19802-20497 bp Feature: domain Description: INT_Rci_Hp1_C Location: 19874-20399 bp Feature: domain Description: INT_Rci_Hp1_C Location: 19874-2 0399 bp Feature: gene Location: 20569-21342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20962-21310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0962 -2 1310 bp Feature: gene Location: 21448-21654 bp Feature: gene Location: 22041-22415 bp Feature: domain Description: COG4190 Location: 22053-22410 bp Feature: domain Description: COG4190 Location: 2 2 053-2 2 410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-GII, COG4190 (Predicted transcriptional regulator )

Seq: JABWAR010000291.1 Candidatus Jettenia caeni isolate MAG_9 scaffold_31974, whole genome shotgun sequence (3666 bp)
Overview 1 RT 1: 1-3584 bp Neighborhood of RT #1 [1, 3584] two_anch vWFA RVT-GII Feature: gene Location: 1-285 bp Feature: gene Location: 476-2608 bp Feature: domain Description: two_anch Location: 485-716 bp Feature: domain Description: two_anch Location: 485-716 bp Feature: domain Description: vWFA Location: 764-1091 bp Feature: domain Description: vWFA Location: 764-1091 bp Feature: gene Location: 2885-3301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891-3242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891-3 242 bp Feature: gene Location: 3228-3584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT two_anch (TIGR02226), vWFA (cl00057), RVT-GII