myRT

myRT report for GCA_013360995.1_ASM1336099v1

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Seq: JABWAP010000032.1 Candidatus Brocadia sinica isolate MAG_7 scaffold_1539, whole genome shotgun sequence (27981 bp)
Overview 1 RT 1: 163-3036 bp Neighborhood of RT #1 [163, 3036] GxxExxY RVT-CRISPR-like Feature: gene Location: 163-525 bp Feature: domain Description: GxxExxY Location: 175-517 bp Feature: domain Description: GxxExxY Location: 1 75-51 7 bp Feature: gene Location: 525-1469 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 714-1311 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 71 4-1 31 1 bp Feature: gene Location: 1469-2248 bp Feature: gene Location: 2260-3036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GxxExxY (TIGR04256), RVT-CRISPR

Seq: JABWAP010000050.1 Candidatus Brocadia sinica isolate MAG_7 scaffold_2297, whole genome shotgun sequence (26387 bp)
Overview 1 RT 1: 2732-6756 bp Neighborhood of RT #1 [2732, 6806] CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III CcmA CcmA Feature: gene Location: 2732-2902 bp Feature: gene Location: 2958-4037 bp Feature: domain Description: CRISPR_Cas6 Location: 3588-3927 bp Feature: domain Description: CRISPR_Cas6 Location: 3588-392 7 bp Feature: gene Location: 4126-5664 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4132-4618 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4132 -4618 bp Feature: domain Description: Cas1_I-II-III Location: 4699-5617 bp Feature: domain Description: Cas1_I-II-III Location: 4699-5617 bp Feature: gene Location: 5736-6290 bp Feature: domain Description: CcmA Location: 6024-6276 bp Feature: domain Description: CcmA Location: 602 4-62 76 bp Feature: gene Location: 6327-6806 bp Feature: domain Description: CcmA Location: 6420-6756 bp Feature: domain Description: CcmA Location: 642 0-6756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), CcmA (COG4133)

Seq: JABWAP010000002.1 Candidatus Brocadia sinica isolate MAG_7 scaffold_443, whole genome shotgun sequence (56114 bp)
Overview 1 RT 1: 2435-4878 bp Neighborhood of RT #1 [2435, 4895] arc_metj RVT-GII GIIM PemK_toxin Feature: gene Location: 2435-2710 bp Feature: domain Description: arc_metj Location: 2465-2582 bp Feature: domain Description: arc_metj Location: 2465-2582 bp Feature: gene Location: 2755-3099 bp Feature: gene Location: 3261-3878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3276-3501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 276-3 501 bp Feature: domain Description: GIIM Note: maturase Location: 3573-3792 bp Feature: domain Description: GIIM Note: maturase Location: 3 573 -3 792 bp Feature: gene Location: 4132-4278 bp Feature: gene Location: 4650-4895 bp Feature: domain Description: PemK_toxin Location: 4689-4878 bp Feature: domain Description: PemK_toxin Location: 4689-4878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-GII, GIIM (pfam08388), PemK_toxin (pfam02452)