myRT

myRT report for GCA_013361095.1_O153

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Seq: JAATWA010000002.1 Pseudanabaena biceps strain O153 plasmid unnamed1 scaffold2_size239714, whole genome shotgun sequence (239714 bp)
Overview 1 RT 1: 43165-53806 bp 2 RT 2: 198817-203763 bp 3 RT 3: 229169-234480 bp Neighborhood of RT #1 [43165, 53806] YtxK COG4646 COG4646 RVT_N RVT-GII McrA COG4646 Helicase_C RVT_N RVT-GII McrA Neighborhood of RT #2 [198817, 203801] AraC_N AraC RVT_N RVT-GII McrA DDE_3 HTH_32 Neighborhood of RT #3 [229169, 234480] Fes MprF RVT-GII GIIM McrA RVT_N Feature: gene Location: 43165-44196 bp Feature: domain Description: YtxK Location: 43705-44059 bp Feature: domain Description: YtxK Location: 43705-44059 bp Feature: gene Location: 44286-46184 bp Feature: domain Description: COG4646 Location: 44580-45108 bp Feature: domain Description: COG4646 Location: 44580-451 08 bp Feature: domain Description: COG4646 Location: 45303-46137 bp Feature: domain Description: COG4646 Location: 45303-461 37 bp Feature: gene Location: 46703-48247 bp Feature: RT Description: RVT_N Location: 46739-46985 bp Feature: RT Description: RVT_N Location: 46739-46985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47036-47663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47036-47663 bp Feature: domain Description: McrA Location: 47897-48218 bp Feature: domain Description: McrA Location: 47897-4821 8 bp Feature: gene Location: 48337-50691 bp Feature: domain Description: COG4646 Location: 48373-49108 bp Feature: domain Description: COG4646 Location: 48373-491 08 bp Feature: domain Description: Helicase_C Location: 49306-49513 bp Feature: domain Description: Helicase_C Location: 49306-4951 3 bp Feature: gene Location: 51223-52767 bp Feature: RT Description: RVT_N Location: 51259-51505 bp Feature: RT Description: RVT_N Location: 51 259-51 505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51556-52183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 556-521 83 bp Feature: domain Description: McrA Location: 52417-52738 bp Feature: domain Description: McrA Location: 5241 7-52738 bp Feature: gene Location: 52970-53206 bp Feature: gene Location: 53336-53806 bp Feature: gene Location: 198817-199767 bp Feature: domain Description: AraC_N Location: 198955-199411 bp Feature: domain Description: AraC_N Location: 1 98955-1 9941 1 bp Feature: domain Description: AraC Location: 199435-199735 bp Feature: domain Description: AraC Location: 1 99435-1 99735 bp Feature: gene Location: 199974-200159 bp Feature: gene Location: 200631-202295 bp Feature: RT Description: RVT_N Location: 200751-200994 bp Feature: RT Description: RVT_N Location: 200751 -200994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201048-201702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 048-201 702 bp Feature: domain Description: McrA Location: 201951-202269 bp Feature: domain Description: McrA Location: 201 951 -202269 bp Feature: gene Location: 202599-203297 bp Feature: domain Description: DDE_3 Location: 202677-203208 bp Feature: domain Description: DDE_3 Location: 202677-203208 bp Feature: gene Location: 203319-203801 bp Feature: domain Description: HTH_32 Location: 203508-203763 bp Feature: domain Description: HTH_32 Location: 203508-203763 bp Feature: gene Location: 229169-230071 bp Feature: domain Description: Fes Location: 229319-229976 bp Feature: domain Description: Fes Location: 22931 9-229976 bp Feature: gene Location: 230071-231765 bp Feature: domain Description: MprF Location: 230143-231724 bp Feature: domain Description: MprF Location: 2301 43-231 724 bp Feature: gene Location: 231859-233223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231862-232429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 862-232429 bp Feature: domain Description: GIIM Note: maturase Location: 232531-232762 bp Feature: domain Description: GIIM Note: maturase Location: 232531 -232762 bp Feature: domain Description: McrA Location: 232837-233119 bp Feature: domain Description: McrA Location: 232837-2331 1 9 bp Feature: gene Location: 233291-233638 bp Feature: RT Description: RVT_N Location: 233336-233579 bp Feature: RT Description: RVT_N Location: 233336-233579 bp Feature: gene Location: 234343-234480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, McrA (COG4058), Helicase_C (pfam00271), AraC_N (pfam06719), AraC (COG2207), DDE_3 (pfam13358), HTH_32 (pfam13565)
Fes (COG2382), MprF (COG2898), GIIM (pfam08388)

Seq: JAATWA010000003.1 Pseudanabaena biceps strain O153 plasmid unnamed2 scaffold3_size297257, whole genome shotgun sequence (297256 bp)
Overview 1 RT 1: 85760-93600 bp 2 RT 2: 184553-188273 bp Neighborhood of RT #1 [85760, 93600] RVT_N RVT-GII McrA COG4646 COG4646 Helicase_C Neighborhood of RT #2 [184553, 188273] OYE_YqiM_FMN PRK06500 RVT-GII RVT_N RVT-GII Nif11 Feature: gene Location: 85760-86230 bp Feature: gene Location: 86360-86596 bp Feature: gene Location: 86799-88343 bp Feature: RT Description: RVT_N Location: 86835-87081 bp Feature: RT Description: RVT_N Location: 86835-87081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87132-87759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87132 -87759 bp Feature: domain Description: McrA Location: 87993-88314 bp Feature: domain Description: McrA Location: 87993-88314 bp Feature: gene Location: 88875-93101 bp Feature: domain Description: COG4646 Location: 89169-89694 bp Feature: domain Description: COG4646 Location: 89169-89694 bp Feature: domain Description: COG4646 Location: 89886-91518 bp Feature: domain Description: COG4646 Location: 89886-91518 bp Feature: domain Description: Helicase_C Location: 91716-91923 bp Feature: domain Description: Helicase_C Location: 91716-9192 3 bp Feature: gene Location: 93295-93600 bp Feature: gene Location: 184553-185632 bp Feature: domain Description: OYE_YqiM_FMN Location: 184565-185576 bp Feature: domain Description: OYE_YqiM_FMN Location: 184565-185576 bp Feature: gene Location: 185744-185938 bp Feature: domain Description: PRK06500 Location: 185795-185933 bp Feature: domain Description: PRK06500 Location: 185795-185933 bp Feature: gene Location: 185994-186449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186018-186441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186018-186441 bp Feature: gene Location: 186462-186770 bp Feature: RT Description: RVT_N Location: 186468-186552 bp Feature: RT Description: RVT_N Location: 186468-186552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186606-186762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186606-186762 bp Feature: gene Location: 187548-187763 bp Feature: domain Description: Nif11 Location: 187551-187692 bp Feature: domain Description: Nif11 Location: 187551-187692 bp Feature: gene Location: 187947-188273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), OYE_YqiM_FMN (cd02932), PRK06500 (SDR family oxidoreductase), Nif11 (pfam07862)

Seq: JAATWA010000004.1 Pseudanabaena biceps strain O153 plasmid unnamed3 scaffold4_size167519, whole genome shotgun sequence (167519 bp)
Overview 1 RT 1: 14-4309 bp 2 RT 2: 119800-127244 bp 3 RT 3: 162357-165953 bp Neighborhood of RT #1 [14, 4317] Fes MprF RVT-GII GIIM McrA RVT_N Neighborhood of RT #2 [119800, 127270] PRK08181 rve RVT-GII GIIM McrA AMIN ligand_gated_channel FhuD Neighborhood of RT #3 [162357, 165964] RVT_N RVT-GII GIIM McrA MprF MprF Feature: gene Location: 14-751 bp Feature: domain Description: Fes Location: 29-656 bp Feature: domain Description: Fes Location: 29-656 bp Feature: gene Location: 751-2445 bp Feature: domain Description: MprF Location: 823-2404 bp Feature: domain Description: MprF Location: 823 -2404 bp Feature: gene Location: 2539-3750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545-2956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545-2956 bp Feature: domain Description: GIIM Note: maturase Location: 3058-3289 bp Feature: domain Description: GIIM Note: maturase Location: 3 058-3 289 bp Feature: domain Description: McrA Location: 3364-3646 bp Feature: domain Description: McrA Location: 3 3 64-3 646 bp Feature: gene Location: 3767-4009 bp Feature: gene Location: 4081-4317 bp Feature: RT Description: RVT_N Location: 4126-4309 bp Feature: RT Description: RVT_N Location: 4126-43 09 bp Feature: gene Location: 119800-120597 bp Feature: domain Description: PRK08181 Location: 119863-120586 bp Feature: domain Description: PRK08181 Location: 119863 -120586 bp Feature: gene Location: 120329-122023 bp Feature: domain Description: rve Location: 120668-121055 bp Feature: domain Description: rve Location: 120668-121055 bp Feature: gene Location: 122191-123201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122233-122407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12223 3 -122407 bp Feature: domain Description: GIIM Note: maturase Location: 122509-122740 bp Feature: domain Description: GIIM Note: maturase Location: 122509-122740 bp Feature: domain Description: McrA Location: 122815-123139 bp Feature: domain Description: McrA Location: 122815-123 13 9 bp Feature: gene Location: 123590-126037 bp Feature: domain Description: AMIN Location: 123686-123968 bp Feature: domain Description: AMIN Location: 123 686-123 968 bp Feature: domain Description: ligand_gated_channel Location: 124073-126035 bp Feature: domain Description: ligand_gated_channel Location: 124073 -12603 5 bp Feature: gene Location: 126290-127270 bp Feature: domain Description: FhuD Location: 126482-127244 bp Feature: domain Description: FhuD Location: 126482-127244 bp Feature: gene Location: 162357-162494 bp Feature: gene Location: 163199-163546 bp Feature: RT Description: RVT_N Location: 163244-163487 bp Feature: RT Description: RVT_N Location: 163 244-163 487 bp Feature: gene Location: 163614-164978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163617-164184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 617-164184 bp Feature: domain Description: GIIM Note: maturase Location: 164286-164517 bp Feature: domain Description: GIIM Note: maturase Location: 164286-164517 bp Feature: domain Description: McrA Location: 164592-164874 bp Feature: domain Description: McrA Location: 164592-164874 bp Feature: gene Location: 165073-165537 bp Feature: domain Description: MprF Location: 165088-165496 bp Feature: domain Description: MprF Location: 165088-165496 bp Feature: gene Location: 165692-165964 bp Feature: domain Description: MprF Location: 165698-165953 bp Feature: domain Description: MprF Location: 165698-165953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fes (COG2382), RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), MprF (COG2898), PRK08181 (transposase; Validated), rve (pfam00665), AMIN (pfam11741), ligand_gated_channel (cd01347)
FhuD (cd01146)

Seq: JAATWA010000005.1 Pseudanabaena biceps strain O153 plasmid unnamed4 scaffold5_size155855, whole genome shotgun sequence (155855 bp)
Overview 1 RT 1: 30717-35076 bp 2 RT 2: 139845-145156 bp Neighborhood of RT #1 [30717, 35165] PRK09250 InsA InsB RVT_N RVT-GII HTH_32 DDE_3 Neighborhood of RT #2 [139845, 145156] Fes MprF RVT-GII GIIM McrA RVT_N Feature: gene Location: 30717-31775 bp Feature: domain Description: PRK09250 Location: 30729-31773 bp Feature: domain Description: PRK09250 Location: 30729-31773 bp Feature: gene Location: 32235-32924 bp Feature: domain Description: InsA Location: 32238-32475 bp Feature: domain Description: InsA Location: 32238-324 75 bp Feature: domain Description: InsB Location: 32529-32883 bp Feature: domain Description: InsB Location: 32529-32883 bp Feature: gene Location: 33184-33918 bp Feature: RT Description: RVT_N Location: 33304-33547 bp Feature: RT Description: RVT_N Location: 33304 -3354 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33601-33892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33601-33892 bp Feature: gene Location: 33963-34445 bp Feature: domain Description: HTH_32 Location: 34152-34407 bp Feature: domain Description: HTH_32 Location: 34 152-34 4 07 bp Feature: gene Location: 34467-35165 bp Feature: domain Description: DDE_3 Location: 34545-35076 bp Feature: domain Description: DDE_3 Location: 34 54 5-35076 bp Feature: gene Location: 139845-140747 bp Feature: domain Description: Fes Location: 139995-140652 bp Feature: domain Description: Fes Location: 139995-14 0652 bp Feature: gene Location: 140747-142441 bp Feature: domain Description: MprF Location: 140819-142400 bp Feature: domain Description: MprF Location: 14 0819-14 24 00 bp Feature: gene Location: 142535-143899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142538-143105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 2538-14 3105 bp Feature: domain Description: GIIM Note: maturase Location: 143207-143438 bp Feature: domain Description: GIIM Note: maturase Location: 14 3207-14 34 38 bp Feature: domain Description: McrA Location: 143513-143795 bp Feature: domain Description: McrA Location: 14 3513-14 3795 bp Feature: gene Location: 143967-144314 bp Feature: RT Description: RVT_N Location: 144012-144255 bp Feature: RT Description: RVT_N Location: 14 4 012-14 4 255 bp Feature: gene Location: 145019-145156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09250 (class I fructose-bisphosphate aldolase), InsA (COG3677), InsB (COG1662), RVT_N (pfam13655), RVT-GII, HTH_32 (pfam13565), DDE_3 (pfam13358), Fes (COG2382), MprF (COG2898), GIIM (pfam08388)
McrA (COG4058)

Seq: JAATWA010000006.1 Pseudanabaena biceps strain O153 plasmid unnamed5 scaffold6_size87098, whole genome shotgun sequence (87099 bp)
Overview 1 RT 1: 5245-9146 bp Neighborhood of RT #1 [5245, 9146] HTH_32 DDE_3 RVT-GII GIIM McrA Feature: gene Location: 5245-5727 bp Feature: domain Description: HTH_32 Location: 5434-5689 bp Feature: domain Description: HTH_32 Location: 5 434-5 689 bp Feature: gene Location: 5749-6447 bp Feature: domain Description: DDE_3 Location: 5827-6358 bp Feature: domain Description: DDE_3 Location: 5 827-635 8 bp Feature: gene Location: 6694-8142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6700-7348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6700-7348 bp Feature: domain Description: GIIM Note: maturase Location: 7450-7681 bp Feature: domain Description: GIIM Note: maturase Location: 745 0-7681 bp Feature: domain Description: McrA Location: 7756-8038 bp Feature: domain Description: McrA Location: 775 6-8038 bp Feature: gene Location: 8308-8823 bp Feature: gene Location: 8904-9146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), McrA (COG4058)