myRT

myRT report for GCA_013361135.1_ASM1336113v1

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Seq: JABWDD010000119.1 Bacteroides ovatus strain F12 NODE_119_length_2494_cov_230.388684, whole genome shotgun sequence (2494 bp)
Overview 1 RT 1: 55-2356 bp Neighborhood of RT #1 [55, 2385] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 55-228 bp Feature: gene Location: 574-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1 660 bp Feature: domain Description: Intron_maturas2 Location: 1735-2050 bp Feature: domain Description: Intron_maturas2 Location: 1 735-2050 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2356 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABWDD010000120.1 Bacteroides ovatus strain F12 NODE_120_length_2486_cov_209.322501, whole genome shotgun sequence (2486 bp)
Overview 1 RT 1: 55-2345 bp Neighborhood of RT #1 [55, 2371] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 55-216 bp Feature: gene Location: 536-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1652 bp Feature: domain Description: Intron_maturas2 Location: 1811-2180 bp Feature: domain Description: Intron_maturas2 Location: 1811-2 180 bp Feature: domain Description: HNHc Note: nucleases Location: 2204-2345 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 04-2 345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABWDD010000121.1 Bacteroides ovatus strain F12 NODE_121_length_2422_cov_260.517955, whole genome shotgun sequence (2422 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: RT Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-143 0 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABWDD010000016.1 Bacteroides ovatus strain F12 NODE_16_length_113611_cov_99.642097, whole genome shotgun sequence (113611 bp)
Overview 1 RT 1: 41877-43420 bp Neighborhood of RT #1 [41877, 43420] RVT-GII HTH_28 Feature: gene Location: 41877-42239 bp Feature: gene Location: 42243-42452 bp Feature: gene Location: 42482-42679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42485-42677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 24 85-4 2677 bp Feature: gene Location: 42800-43090 bp Feature: domain Description: HTH_28 Location: 42824-42968 bp Feature: domain Description: HTH_28 Location: 4 2824 -4 2968 bp Feature: gene Location: 43268-43420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: JABWDD010000032.1 Bacteroides ovatus strain F12 NODE_32_length_76788_cov_103.939153, whole genome shotgun sequence (76788 bp)
Overview 1 RT 1: 64742-76143 bp Neighborhood of RT #1 [64742, 76143] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 64742-66544 bp Feature: domain Description: rpsA Location: 64811-66428 bp Feature: domain Description: rpsA Location: 64811-66428 bp Feature: gene Location: 66641-72598 bp Feature: domain Description: DUF4011 Location: 67871-68384 bp Feature: domain Description: DUF4011 Location: 67871-68384 bp Feature: domain Description: DEXXQc_SF1 Location: 68723-69494 bp Feature: domain Description: DEXXQc_SF1 Location: 68723-69494 bp Feature: domain Description: DEXXQc_SF1 Location: 70151-70910 bp Feature: domain Description: DEXXQc_SF1 Location: 7015 1-70910 bp Feature: domain Description: TIGR00376 Location: 71039-71429 bp Feature: domain Description: TIGR00376 Location: 71039-71429 bp Feature: domain Description: MTES_1575 Location: 71582-71867 bp Feature: domain Description: MTES_15 75 Location: 715 82-71867 bp Feature: domain Description: DUF3320 Location: 72107-72248 bp Feature: domain Description: DUF3320 Location: 72107-72248 bp Feature: gene Location: 72600-73730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72921-73464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72921-73464 bp Feature: gene Location: 73936-76143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: JABWDD010000039.1 Bacteroides ovatus strain F12 NODE_39_length_61071_cov_114.406828, whole genome shotgun sequence (61071 bp)
Overview 1 RT 1: 18412-31917 bp Neighborhood of RT #1 [18412, 31917] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 18412-18654 bp Feature: gene Location: 18834-19319 bp Feature: gene Location: 19316-20620 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19529-20123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19529-20123 bp Feature: gene Location: 21137-27874 bp Feature: domain Description: Laminin_G_3 Location: 22598-22676 bp Feature: domain Description: Laminin_G_3 Location: 22598-226 76 bp Feature: domain Description: Laminin_G_3 Location: 23327-23753 bp Feature: domain Description: Laminin_G_3 Location: 23327-23753 bp Feature: gene Location: 27901-31917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: JABWDD010000050.1 Bacteroides ovatus strain F12 NODE_50_length_51671_cov_85.791751, whole genome shotgun sequence (51671 bp)
Overview 1 RT 1: 17696-27865 bp Neighborhood of RT #1 [17696, 27903] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 17696-24484 bp Feature: domain Description: Laminin_G_3 Location: 20132-20513 bp Feature: domain Description: Laminin_G_3 Location: 20132-20513 bp Feature: domain Description: pfam08757 Location: 21308-21632 bp Feature: domain Description: pfam087 57 Location: 21308-21632 bp Feature: domain Description: LRR_AMN1 Location: 22244-22688 bp Feature: domain Description: LRR_AMN1 Location: 22244-22688 bp Feature: gene Location: 24545-24712 bp Feature: gene Location: 24857-26212 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25133-25724 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25133-257 24 bp Feature: gene Location: 26214-26708 bp Feature: gene Location: 26758-27903 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26782-27028 bp Feature: domain Description: Arm-DNA-bind_5 Location: 267 82-27 028 bp Feature: domain Description: Phage_int_SAM_5 Location: 27067-27352 bp Feature: domain Description: Phage_int_SAM_5 Location: 27 067 -27 352 bp Feature: domain Description: INTN1_C_like Location: 27391-27865 bp Feature: domain Description: INTN1_C_like Location: 27 391-27 865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)