myRT

myRT report for GCA_013361175.1_ASM1336117v1

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Seq: JABWDE010000115.1 Bacteroides vulgatus strain H23 NODE_115_length_5952_cov_28.187723, whole genome shotgun sequence (5952 bp)
Overview 1 RT 1: 198-4606 bp Neighborhood of RT #1 [198, 5613] VirE_N RVT-UG28b DUF262 Feature: gene Location: 198-1217 bp Feature: domain Description: VirE_N Location: 390-762 bp Feature: domain Description: VirE_N Location: 390-762 bp Feature: gene Location: 1333-1635 bp Feature: gene Location: 1688-3109 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 1760-2513 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 1 760-251 3 bp Feature: gene Location: 3113-3913 bp Feature: gene Location: 3916-5613 bp Feature: domain Description: DUF262 Location: 3973-4606 bp Feature: domain Description: DUF262 Location: 3973-4606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirE_N (pfam08800), RVT-UG28b, DUF262 (pfam03235)

Seq: JABWDE010000139.1 Bacteroides vulgatus strain H23 NODE_139_length_2490_cov_255.667351, whole genome shotgun sequence (2490 bp)
Overview 1 RT 1: 42-2032 bp Neighborhood of RT #1 [42, 2376] RVT-GII Intron_maturas2 Feature: gene Location: 42-530 bp Feature: gene Location: 565-2376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 9-1651 bp Feature: domain Description: Intron_maturas2 Location: 1723-2032 bp Feature: domain Description: Intron_maturas2 Location: 172 3-2 032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: JABWDE010000140.1 Bacteroides vulgatus strain H23 NODE_140_length_2434_cov_215.198403, whole genome shotgun sequence (2434 bp)
Overview 1 RT 1: 681-1956 bp Neighborhood of RT #1 [681, 2348] RVT_N RVT-GII GIIM Feature: gene Location: 681-2348 bp Feature: domain Description: RVT_N Location: 735-978 bp Feature: domain Description: RVT_N Location: 73 5-978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023 -1671 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1725-1956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABWDE010000014.1 Bacteroides vulgatus strain H23 NODE_14_length_98802_cov_47.893080, whole genome shotgun sequence (98802 bp)
Overview 1 RT 1: 2-2217 bp Neighborhood of RT #1 [2, 2234] RVT-GII DUF4134 Feature: gene Location: 2-1384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-1088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-1088 bp Feature: gene Location: 1564-1914 bp Feature: gene Location: 1926-2234 bp Feature: domain Description: DUF4134 Location: 2019-2217 bp Feature: domain Description: DUF4 134 Location: 2019-2217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4134 (pfam13572)

Seq: JABWDE010000001.1 Bacteroides vulgatus strain H23 NODE_1_length_235812_cov_48.384154, whole genome shotgun sequence (235812 bp)
Overview 1 RT 1: 82303-92472 bp Neighborhood of RT #1 [82303, 92510] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 82303-89091 bp Feature: domain Description: Laminin_G_3 Location: 84739-85120 bp Feature: domain Description: Laminin_G_3 Location: 84739-85 120 bp Feature: domain Description: pfam08757 Location: 85915-86239 bp Feature: domain Description: pfam0875 7 Location: 85 915 -86239 bp Feature: domain Description: LRR_AMN1 Location: 86851-87295 bp Feature: domain Description: LRR_AMN1 Location: 8685 1-87295 bp Feature: gene Location: 89152-89319 bp Feature: gene Location: 89464-90819 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89740-90331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89740-90331 bp Feature: gene Location: 90821-91315 bp Feature: gene Location: 91365-92510 bp Feature: domain Description: Arm-DNA-bind_5 Location: 91389-91635 bp Feature: domain Description: Arm-DNA-bind_5 Location: 91389-91635 bp Feature: domain Description: Phage_int_SAM_5 Location: 91674-91959 bp Feature: domain Description: Phage_int_SAM_5 Location: 91674-9195 9 bp Feature: domain Description: INTN1_C_like Location: 91998-92472 bp Feature: domain Description: INTN1_C_like Location: 91998-92472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: JABWDE010000033.1 Bacteroides vulgatus strain H23 NODE_33_length_56114_cov_57.055067, whole genome shotgun sequence (56114 bp)
Overview 1 RT 1: 50856-54620 bp Neighborhood of RT #1 [50856, 54691] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50856-52190 bp Feature: gene Location: 52234-52578 bp Feature: gene Location: 52836-53870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53046-53658 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53046 -536 58 bp Feature: gene Location: 53848-54219 bp Feature: gene Location: 54221-54691 bp Feature: domain Description: Phage_holin_4_1 Location: 54308-54620 bp Feature: domain Description: Phage_holin_4_1 Location: 54308-546 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: JABWDE010000003.1 Bacteroides vulgatus strain H23 NODE_3_length_163000_cov_44.270607, whole genome shotgun sequence (163000 bp)
Overview 1 RT 1: 38687-41240 bp 2 RT 2: 115717-118885 bp Neighborhood of RT #1 [38687, 41254] DUF4134 RVT-GII Intron_maturas2 Toprim_2 Neighborhood of RT #2 [115717, 118917] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 38687-39160 bp Feature: gene Location: 39141-39407 bp Feature: domain Description: DUF4134 Location: 39192-39390 bp Feature: domain Description: DUF4134 Location: 39192-39390 bp Feature: gene Location: 39449-40372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39458-39650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39458-39650 bp Feature: domain Description: Intron_maturas2 Location: 39719-40031 bp Feature: domain Description: Intron_maturas2 Location: 397 19-40031 bp Feature: gene Location: 40344-40715 bp Feature: gene Location: 40844-41254 bp Feature: domain Description: Toprim_2 Location: 40955-41240 bp Feature: domain Description: Toprim_2 Location: 40955-41240 bp Feature: gene Location: 115717-115962 bp Feature: gene Location: 115946-116452 bp Feature: gene Location: 116520-118010 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116913-117510 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 116913-117 510 bp Feature: gene Location: 118257-118568 bp Feature: domain Description: HTH_XRE Location: 118371-118524 bp Feature: domain Description: HTH_XRE Location: 11837 1-118524 bp Feature: gene Location: 118573-118917 bp Feature: domain Description: Gp49 Location: 118627-118885 bp Feature: domain Description: Gp49 Location: 118627 -118885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: JABWDE010000051.1 Bacteroides vulgatus strain H23 NODE_51_length_40323_cov_86.320825, whole genome shotgun sequence (40288 bp)
Overview 1 RT 1: 25305-29452 bp Neighborhood of RT #1 [25305, 29452] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 25305-26516 bp Feature: domain Description: TipAS Location: 25329-25632 bp Feature: domain Description: TipAS Location: 25329-25632 bp Feature: domain Description: COG2369 Location: 25752-25938 bp Feature: domain Description: COG2369 Location: 25752-25938 bp Feature: domain Description: LPD3 Location: 26157-26439 bp Feature: domain Description: LPD3 Location: 26157-26439 bp Feature: gene Location: 26614-26847 bp Feature: gene Location: 27223-28524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27436-28033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27436-28 033 bp Feature: gene Location: 28521-29006 bp Feature: gene Location: 29210-29452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: JABWDE010000059.1 Bacteroides vulgatus strain H23 NODE_59_length_29266_cov_46.185649, whole genome shotgun sequence (29266 bp)
Overview 1 RT 1: 24959-29214 bp Neighborhood of RT #1 [24959, 29234] PLDc_Nuc_like_unchar2 TrwB_AAD_bind TraG-D_C RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N Feature: gene Location: 24959-25768 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 25364-25754 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 25364-25754 bp Feature: gene Location: 25804-27468 bp Feature: domain Description: TrwB_AAD_bind Location: 26068-26176 bp Feature: domain Description: TrwB_AAD_bind Location: 26068-26176 bp Feature: domain Description: TraG-D_C Location: 26845-27175 bp Feature: domain Description: TraG-D_C Location: 26845-27175 bp Feature: gene Location: 27455-28924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27485-28202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27485-28202 bp Feature: domain Description: Intron_maturas2 Location: 28361-28583 bp Feature: domain Description: Intron_maturas2 Location: 28361-28583 bp Feature: domain Description: HNHc Note: nucleases Location: 28757-28898 bp Feature: domain Description: HNHc Note: nucleases Location: 28757-2889 8 bp Feature: gene Location: 28914-29234 bp Feature: domain Description: Bac_Flav_CT_N Location: 29037-29214 bp Feature: domain Description: Bac_Flav_CT_N Location: 29 037-29 214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_Nuc_like_unchar2 (cd09174), TrwB_AAD_bind (pfam10412), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_N (TIGR03780)

Seq: JABWDE010000067.1 Bacteroides vulgatus strain H23 NODE_67_length_25583_cov_67.431252, whole genome shotgun sequence (25583 bp)
Overview 1 RT 1: 4728-9891 bp Neighborhood of RT #1 [4728, 9893] DUF1896 PRK07726 RVT-GII Intron_maturas2 HNHc PRK07726 Feature: gene Location: 4728-5171 bp Feature: domain Description: DUF1896 Location: 4749-5169 bp Feature: domain Description: DUF1896 Location: 4749-5169 bp Feature: gene Location: 5361-7190 bp Feature: domain Description: PRK07726 Location: 5502-7020 bp Feature: domain Description: PRK07726 Location: 5502-7020 bp Feature: gene Location: 7168-8970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7432-8254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7432-8254 bp Feature: domain Description: Intron_maturas2 Location: 8398-8653 bp Feature: domain Description: Intron_maturas2 Location: 8398-8653 bp Feature: domain Description: HNHc Note: nucleases Location: 8809-8950 bp Feature: domain Description: HNHc Note: nucleases Location: 8809-8950 bp Feature: gene Location: 9214-9444 bp Feature: gene Location: 9531-9893 bp Feature: domain Description: PRK07726 Location: 9534-9891 bp Feature: domain Description: PRK07726 Location: 9534-9891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), PRK07726 (DNA topoisomerase 3), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)