myRT

myRT report for GCA_013361195.1_ASM1336119v1

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Seq: JABWDF010000131.1 Bacteroides uniformis strain A23 NODE_131_length_11666_cov_40.632073, whole genome shotgun sequence (11666 bp)
Overview 1 RT 1: 4607-9518 bp Neighborhood of RT #1 [4607, 11665] RVT-DGRs Prophage_tail Prophage_tail Feature: gene Location: 4607-5944 bp Feature: gene Location: 5966-6190 bp Feature: gene Location: 6378-7550 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6597-7185 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6597-71 85 bp Feature: gene Location: 7662-8069 bp Feature: gene Location: 8075-11665 bp Feature: domain Description: Prophage_tail Location: 8351-8630 bp Feature: domain Description: Prophage_tail Location: 8351 -8630 bp Feature: domain Description: Prophage_tail Location: 9275-9518 bp Feature: domain Description: Prophage_tail Location: 9275-951 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Prophage_tail (pfam06605)

Seq: JABWDF010000013.1 Bacteroides uniformis strain A23 NODE_13_length_47189_cov_67.127594, whole genome shotgun sequence (47189 bp)
Overview 1 RT 1: 30543-35786 bp Neighborhood of RT #1 [30543, 35812] YWFCY RVT-GII Intron_maturas2 TraG-D_C RibD_C Feature: gene Location: 30543-31274 bp Feature: domain Description: YWFCY Location: 30549-30726 bp Feature: domain Description: YWFCY Location: 30549-3072 6 bp Feature: gene Location: 31395-31784 bp Feature: gene Location: 31821-33284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32106-32925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 106-32 92 5 bp Feature: domain Description: Intron_maturas2 Location: 33000-33279 bp Feature: domain Description: Intron_maturas2 Location: 33000-332 79 bp Feature: gene Location: 33639-35096 bp Feature: domain Description: TraG-D_C Location: 34440-34776 bp Feature: domain Description: TraG-D_C Location: 34440-34776 bp Feature: gene Location: 35396-35812 bp Feature: domain Description: RibD_C Location: 35624-35786 bp Feature: domain Description: RibD_C Location: 3562 4-35786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), RibD_C (pfam01872)

Seq: JABWDF010000018.1 Bacteroides uniformis strain A23 NODE_18_length_43390_cov_69.980893, whole genome shotgun sequence (43390 bp)
Overview 1 RT 1: 9401-14615 bp Neighborhood of RT #1 [9401, 14626] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 9401-9646 bp Feature: domain Description: Bac_Flav_CT_G Location: 9404-9629 bp Feature: domain Description: Bac_Flav_CT_G Location: 9404-9629 bp Feature: gene Location: 9858-10004 bp Feature: gene Location: 10202-11929 bp Feature: RT Description: RVT_N Location: 10307-10550 bp Feature: RT Description: RVT_N Location: 103 07-10550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10595-11243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10595-11243 bp Feature: domain Description: GIIM Note: maturase Location: 11294-11528 bp Feature: domain Description: GIIM Note: maturase Location: 11294-11528 bp Feature: gene Location: 11910-14297 bp Feature: domain Description: Bac_Flav_CT_G Location: 12030-14289 bp Feature: domain Description: Bac_Flav_CT_G Location: 1203 0-14289 bp Feature: gene Location: 14312-14626 bp Feature: domain Description: DUF3876 Location: 14366-14615 bp Feature: domain Description: DUF3 876 Location: 143 66-14615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: JABWDF010000001.1 Bacteroides uniformis strain A23 NODE_1_length_119966_cov_60.950230, whole genome shotgun sequence (119966 bp)
Overview 1 RT 1: 136-5844 bp Neighborhood of RT #1 [136, 5849] OMP_RagA_SusC RVT-GII Intron_maturas2 HNHc OMP_RagA_SusC Feature: gene Location: 136-2028 bp Feature: domain Description: OMP_RagA_SusC Location: 232-2017 bp Feature: domain Description: OMP_RagA_SusC Location: 232-2017 bp Feature: gene Location: 2580-4388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2844-3666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284 4 -3666 bp Feature: domain Description: Intron_maturas2 Location: 3825-4047 bp Feature: domain Description: Intron_maturas2 Location: 3825-4 04 7 bp Feature: domain Description: HNHc Note: nucleases Location: 4221-4362 bp Feature: domain Description: HNHc Note: nucleases Location: 4 221-4 362 bp Feature: gene Location: 4378-4539 bp Feature: gene Location: 4686-5849 bp Feature: domain Description: OMP_RagA_SusC Location: 4713-5844 bp Feature: domain Description: OMP_RagA_SusC Location: 4 713-584 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABWDF010000026.1 Bacteroides uniformis strain A23 NODE_26_length_38213_cov_65.851093, whole genome shotgun sequence (38213 bp)
Overview 1 RT 1: 6753-16064 bp Neighborhood of RT #1 [6753, 16447] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 6753-7967 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6777-7041 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6777-7041 bp Feature: domain Description: Phage_int_SAM_5 Location: 7083-7350 bp Feature: domain Description: Phage_int_SAM_5 Location: 7083-735 0 bp Feature: domain Description: INTN1_C_like Location: 7422-7917 bp Feature: domain Description: INTN1_C_like Location: 7422-7917 bp Feature: gene Location: 8060-9343 bp Feature: gene Location: 9297-10964 bp Feature: RT Description: RVT_N Location: 9351-9594 bp Feature: RT Description: RVT_N Location: 935 1-95 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9639-10287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9639-10287 bp Feature: domain Description: GIIM Note: maturase Location: 10341-10572 bp Feature: domain Description: GIIM Note: maturase Location: 10341-105 72 bp Feature: gene Location: 10946-11260 bp Feature: gene Location: 11621-16447 bp Feature: domain Description: N6_Mtase Location: 11909-12497 bp Feature: domain Description: N6_Mtase Location: 11909-12497 bp Feature: domain Description: COG4646 Location: 14009-16064 bp Feature: domain Description: COG4646 Location: 14009-16064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABWDF010000004.1 Bacteroides uniformis strain A23 NODE_4_length_87692_cov_68.982895, whole genome shotgun sequence (87692 bp)
Overview 1 RT 1: 78276-81096 bp Neighborhood of RT #1 [78276, 81096] RVT-DGRs Feature: gene Location: 78276-78509 bp Feature: gene Location: 78531-78788 bp Feature: gene Location: 78885-80186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79098-79692 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79098-796 92 bp Feature: gene Location: 80219-80668 bp Feature: gene Location: 80854-81096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JABWDF010000058.1 Bacteroides uniformis strain A23 NODE_58_length_27409_cov_47.363091, whole genome shotgun sequence (27409 bp)
Overview 1 RT 1: 15510-23207 bp Neighborhood of RT #1 [15510, 23887] DUF4133 Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G SMC_prok_B Feature: gene Location: 15510-15809 bp Feature: domain Description: DUF4133 Location: 15552-15732 bp Feature: domain Description: DUF4133 Location: 15552-157 32 bp Feature: gene Location: 15932-18145 bp Feature: domain Description: Bac_Flav_CT_G Location: 16082-17591 bp Feature: domain Description: Bac_Flav_CT_G Location: 16082-17 591 bp Feature: domain Description: Bac_Flav_CT_G Location: 17663-18131 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 663-18131 bp Feature: gene Location: 18692-20503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18956-19778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18956-197 7 8 bp Feature: domain Description: Intron_maturas2 Location: 19853-20168 bp Feature: domain Description: Intron_maturas2 Location: 19853-20168 bp Feature: domain Description: HNHc Note: nucleases Location: 20324-20474 bp Feature: domain Description: HNHc Note: nucleases Location: 20324-2047 4 bp Feature: gene Location: 20560-21126 bp Feature: domain Description: Bac_Flav_CT_G Location: 20593-21013 bp Feature: domain Description: Bac_Flav_CT_G Location: 20593-21013 bp Feature: gene Location: 21347-23887 bp Feature: domain Description: SMC_prok_B Location: 22895-23207 bp Feature: domain Description: SMC_prok_B Location: 22895-23207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SMC_prok_B (TIGR02168)

Seq: JABWDF010000007.1 Bacteroides uniformis strain A23 NODE_7_length_54147_cov_41.568365, whole genome shotgun sequence (54147 bp)
Overview 1 RT 1: 36170-39370 bp Neighborhood of RT #1 [36170, 39370] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 36170-36514 bp Feature: domain Description: Gp49 Location: 36224-36482 bp Feature: domain Description: Gp49 Location: 36224-3648 2 bp Feature: gene Location: 36519-36830 bp Feature: domain Description: HTH_XRE Location: 36633-36786 bp Feature: domain Description: HTH_XRE Location: 36633-3678 6 bp Feature: gene Location: 37077-38567 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37470-38067 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37470-38 067 bp Feature: gene Location: 38635-39141 bp Feature: gene Location: 39125-39370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: JABWDF010000008.1 Bacteroides uniformis strain A23 NODE_8_length_54116_cov_72.426241, whole genome shotgun sequence (54116 bp)
Overview 1 RT 1: 14458-27963 bp Neighborhood of RT #1 [14458, 27963] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 14458-14700 bp Feature: gene Location: 14880-15365 bp Feature: gene Location: 15362-16666 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15575-16169 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15575-16169 bp Feature: gene Location: 17183-23920 bp Feature: domain Description: Laminin_G_3 Location: 18644-18722 bp Feature: domain Description: Laminin_G_3 Location: 18644-18722 bp Feature: domain Description: Laminin_G_3 Location: 19373-19799 bp Feature: domain Description: Laminin_G_3 Location: 19 373-19 79 9 bp Feature: gene Location: 23947-27963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)