myRT

myRT report for GCA_013361245.1_ASM1336124v1

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Seq: JABWDH010000014.1 Bacteroides ovatus strain F11 NODE_14_length_76738_cov_17.880378, whole genome shotgun sequence (76738 bp)
Overview 1 RT 1: 64742-76143 bp Neighborhood of RT #1 [64742, 76143] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 64742-66544 bp Feature: domain Description: rpsA Location: 64811-66428 bp Feature: domain Description: rpsA Location: 6481 1 -66428 bp Feature: gene Location: 66641-72598 bp Feature: domain Description: DUF4011 Location: 67871-68384 bp Feature: domain Description: DUF401 1 Location: 67871 -68384 bp Feature: domain Description: DEXXQc_SF1 Location: 68723-69494 bp Feature: domain Description: DEXXQc_SF1 Location: 68723-69494 bp Feature: domain Description: DEXXQc_SF1 Location: 70151-70910 bp Feature: domain Description: DEXXQc_SF1 Location: 701 51 -7091 0 bp Feature: domain Description: TIGR00376 Location: 71039-71429 bp Feature: domain Description: TIGR00376 Location: 71 039-71 429 bp Feature: domain Description: MTES_1575 Location: 71582-71867 bp Feature: domain Description: MTES_1 575 Location: 71 582-71 867 bp Feature: domain Description: DUF3320 Location: 72107-72248 bp Feature: domain Description: DUF3320 Location: 721 07-72248 bp Feature: gene Location: 72600-73730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72921-73464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72921 -73464 bp Feature: gene Location: 73936-76143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: JABWDH010000021.1 Bacteroides ovatus strain F11 NODE_21_length_61090_cov_19.957188, whole genome shotgun sequence (61090 bp)
Overview 1 RT 1: 33198-42660 bp Neighborhood of RT #1 [33198, 42660] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 33198-39935 bp Feature: domain Description: Laminin_G_3 Location: 34659-34737 bp Feature: domain Description: Laminin_G_3 Location: 34659-34737 bp Feature: domain Description: Laminin_G_3 Location: 35388-35814 bp Feature: domain Description: Laminin_G_3 Location: 35388-35814 bp Feature: gene Location: 40180-40335 bp Feature: gene Location: 40452-41756 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40665-41259 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40665-412 59 bp Feature: gene Location: 41753-42238 bp Feature: gene Location: 42418-42660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: JABWDH010000281.1 Bacteroides ovatus strain F11 NODE_281_length_2494_cov_36.186962, whole genome shotgun sequence (2494 bp)
Overview 1 RT 1: 55-2356 bp Neighborhood of RT #1 [55, 2385] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 55-228 bp Feature: gene Location: 574-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 8-1660 bp Feature: domain Description: Intron_maturas2 Location: 1735-2050 bp Feature: domain Description: Intron_maturas2 Location: 173 5-2050 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2356 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-23 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABWDH010000283.1 Bacteroides ovatus strain F11 NODE_283_length_2486_cov_44.440148, whole genome shotgun sequence (2486 bp)
Overview 1 RT 1: 55-2345 bp Neighborhood of RT #1 [55, 2371] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 55-216 bp Feature: gene Location: 536-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1652 bp Feature: domain Description: Intron_maturas2 Location: 1811-2180 bp Feature: domain Description: Intron_maturas2 Location: 1811-2180 bp Feature: domain Description: HNHc Note: nucleases Location: 2204-2345 bp Feature: domain Description: HNHc Note: nucleases Location: 2204 -234 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABWDH010000285.1 Bacteroides ovatus strain F11 NODE_285_length_2422_cov_54.261090, whole genome shotgun sequence (2422 bp)
Overview 1 RT 1: 104-2318 bp Neighborhood of RT #1 [104, 2318] RVT_N RVT-GII GIIM Feature: gene Location: 104-1831 bp Feature: RT Description: RVT_N Location: 209-452 bp Feature: RT Description: RVT_N Location: 209-45 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-1145 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1430 bp Feature: gene Location: 2163-2318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABWDH010000044.1 Bacteroides ovatus strain F11 NODE_44_length_40780_cov_15.056648, whole genome shotgun sequence (40780 bp)
Overview 1 RT 1: 12783-21194 bp Neighborhood of RT #1 [12783, 22990] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 12783-13928 bp Feature: domain Description: Arm-DNA-bind_5 Location: 12807-13053 bp Feature: domain Description: Arm-DNA-bind_5 Location: 12807-13053 bp Feature: domain Description: Phage_int_SAM_5 Location: 13092-13377 bp Feature: domain Description: Phage_int_SAM_5 Location: 13092-13377 bp Feature: domain Description: INTN1_C_like Location: 13416-13890 bp Feature: domain Description: INTN1_C_like Location: 13416 -13890 bp Feature: gene Location: 13978-14472 bp Feature: gene Location: 14474-15829 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14750-15341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14750-15341 bp Feature: gene Location: 15974-16141 bp Feature: gene Location: 16202-22990 bp Feature: domain Description: Laminin_G_3 Location: 18638-19019 bp Feature: domain Description: Laminin_G_3 Location: 186 38-19019 bp Feature: domain Description: pfam08757 Location: 19814-20138 bp Feature: domain Description: pfam08757 Location: 19814-20138 bp Feature: domain Description: LRR_AMN1 Location: 20750-21194 bp Feature: domain Description: LRR_AMN1 Location: 20750-21194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: JABWDH010000089.1 Bacteroides ovatus strain F11 NODE_89_length_28125_cov_18.198254, whole genome shotgun sequence (28125 bp)
Overview 1 RT 1: 711-2254 bp Neighborhood of RT #1 [711, 2254] RVT-GII HTH_28 Feature: gene Location: 711-974 bp Feature: gene Location: 1077-1286 bp Feature: gene Location: 1316-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319-1511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319-1511 bp Feature: gene Location: 1634-1924 bp Feature: domain Description: HTH_28 Location: 1658-1802 bp Feature: domain Description: HTH_28 Location: 1658-1802 bp Feature: gene Location: 2102-2254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)