myRT

myRT report for GCA_013361255.1_ASM1336125v1

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Seq: JABWDK010000020.1 Faecalibacillus sp. H12 NODE_20_length_38066_cov_723.711847, whole genome shotgun sequence (38066 bp)
Overview 1 RT 1: 20572-25075 bp Neighborhood of RT #1 [20572, 25080] VirD4 RVT_N RVT-GII GIIM VirD4 Maff2 Feature: gene Location: 20572-21225 bp Feature: domain Description: VirD4 Location: 20794-21217 bp Feature: domain Description: VirD4 Location: 20794-21 21 7 bp Feature: gene Location: 21507-21698 bp Feature: gene Location: 21807-23471 bp Feature: RT Description: RVT_N Location: 21852-22095 bp Feature: RT Description: RVT_N Location: 21 852-22095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22140-22791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 40-22791 bp Feature: domain Description: GIIM Note: maturase Location: 22842-23076 bp Feature: domain Description: GIIM Note: maturase Location: 22842-23076 bp Feature: gene Location: 23606-24775 bp Feature: domain Description: VirD4 Location: 23618-24608 bp Feature: domain Description: VirD4 Location: 2361 8-24608 bp Feature: gene Location: 24865-25080 bp Feature: domain Description: Maff2 Location: 24868-25075 bp Feature: domain Description: Maff2 Location: 24868-25075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Maff2 (pfam12750)

Seq: JABWDK010000002.1 Faecalibacillus sp. H12 NODE_2_length_337304_cov_252.732788, whole genome shotgun sequence (337304 bp)
Overview 1 RT 1: 235511-244928 bp 2 RT 2: 296765-301587 bp Neighborhood of RT #1 [235511, 245104] DUF3801 VirD4 VirD4 RVT-GII TraG-D_C Maff2 RVT-GII HNHc PrgI Neighborhood of RT #2 [296765, 301601] XRE HipB COG2932 RVT_N RVT-GII GIIM PRK03103 LexA_DNA_bind Feature: gene Location: 235511-236002 bp Feature: domain Description: DUF3801 Location: 235574-235970 bp Feature: domain Description: DUF3801 Location: 2 35574-2 35970 bp Feature: gene Location: 236026-236928 bp Feature: domain Description: VirD4 Location: 236260-236617 bp Feature: domain Description: VirD4 Location: 2 362 60-2 36617 bp Feature: domain Description: VirD4 Location: 236713-236866 bp Feature: domain Description: VirD4 Location: 2 36713-2 36866 bp Feature: gene Location: 237554-239464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237884-238628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 37884-2 3862 8 bp Feature: gene Location: 239606-240628 bp Feature: domain Description: TraG-D_C Location: 240074-240428 bp Feature: domain Description: TraG-D_C Location: 2 40074-2 4042 8 bp Feature: gene Location: 240750-240881 bp Feature: domain Description: Maff2 Location: 240753-240879 bp Feature: domain Description: Maff2 Location: 2 40753-2 40879 bp Feature: gene Location: 241601-243487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241934-242672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 41934-2 42 672 bp Feature: domain Description: HNHc Note: nucleases Location: 243221-243371 bp Feature: domain Description: HNHc Note: nucleases Location: 2 432 2 1-2 43371 bp Feature: gene Location: 243747-244616 bp Feature: gene Location: 244640-245104 bp Feature: domain Description: PrgI Location: 244655-244928 bp Feature: domain Description: PrgI Location: 2 44655-2 4492 8 bp Feature: gene Location: 296765-296965 bp Feature: domain Description: XRE Location: 296777-296960 bp Feature: domain Description: XRE Location: 2 96777-2 96960 bp Feature: gene Location: 297022-297753 bp Feature: domain Description: HipB Location: 297034-297250 bp Feature: domain Description: HipB Location: 2 97034-2 972 50 bp Feature: domain Description: COG2932 Location: 297406-297718 bp Feature: domain Description: COG2 932 Location: 2 97406-2 97718 bp Feature: gene Location: 298580-300049 bp Feature: RT Description: RVT_N Location: 298625-298862 bp Feature: RT Description: RVT_N Location: 2 9862 5-2 98862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298913-299561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 98913-2 99561 bp Feature: domain Description: GIIM Note: maturase Location: 299612-299846 bp Feature: domain Description: GIIM Note: maturase Location: 2 99612 -2 99846 bp Feature: gene Location: 300046-301374 bp Feature: domain Description: PRK03103 Location: 300172-301306 bp Feature: domain Description: PRK03103 Location: 300172 -301306 bp Feature: gene Location: 301389-301601 bp Feature: domain Description: LexA_DNA_bind Location: 301398-301587 bp Feature: domain Description: LexA_DNA_bind Location: 301398-301587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, TraG-D_C (pfam12696), Maff2 (pfam12750), HNHc (smart00507), PrgI (pfam12666), XRE (COG1476), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains )
RVT_N (pfam13655), GIIM (pfam08388), PRK03103 (DNA polymerase IV; Reviewed), LexA_DNA_bind (pfam01726)