myRT

myRT report for GCA_013364055.1_ASM1336405v1

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Seq: JABWHT010000002.1 Bacillus thuringiensis strain FDAARGOS_800 plasmid unnamed2 tig00000011_trim_quiver_pilon, whole genome shotgun sequence (406404 bp)
Overview 1 RT 1: 221860-230158 bp 2 RT 2: 327263-345853 bp 3 RT 3: 400935-405238 bp Neighborhood of RT #1 [221860, 230158] RVT-GII HNHc T4SS-DNA_transf T4SS-DNA_transf Neighborhood of RT #2 [327263, 349095] YdiL RVT-GII HNHc DUF2325 NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like RVT-GII HNHc RVT-GII CwlT_like TrbL Neighborhood of RT #3 [400935, 405238] E1_enzyme_family RVT-GII Intron_maturas2 HNHc PRTRC_ThiF Feature: gene Location: 221860-222534 bp Feature: gene Location: 222732-222965 bp Feature: gene Location: 223253-225082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223553-224255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223553-224255 bp Feature: domain Description: HNHc Note: nucleases Location: 224834-224966 bp Feature: domain Description: HNHc Note: nucleases Location: 224834-224966 bp Feature: gene Location: 225283-227172 bp Feature: domain Description: T4SS-DNA_transf Location: 225292-225775 bp Feature: domain Description: T4SS-DNA_transf Location: 225292-225775 bp Feature: domain Description: T4SS-DNA_transf Location: 226165-226681 bp Feature: domain Description: T4SS-DNA_transf Location: 2261 65-226681 bp Feature: gene Location: 227204-230158 bp Feature: gene Location: 327263-328060 bp Feature: domain Description: YdiL Location: 327380-328046 bp Feature: domain Description: YdiL Location: 327380-328046 bp Feature: gene Location: 329656-329943 bp Feature: gene Location: 330506-332305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330803-331496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330803-331 496 bp Feature: domain Description: HNHc Note: nucleases Location: 332054-332192 bp Feature: domain Description: HNHc Note: nucleases Location: 332054-3321 92 bp Feature: gene Location: 333365-333562 bp Feature: gene Location: 333637-333936 bp Feature: domain Description: DUF2325 Location: 333649-333919 bp Feature: domain Description: DUF2325 Location: 333649-33391 9 bp Feature: gene Location: 335069-335944 bp Feature: domain Description: NlpD Location: 335084-335513 bp Feature: domain Description: NlpD Location: 335084-33551 3 bp Feature: domain Description: Spr Location: 335549-335885 bp Feature: domain Description: Spr Location: 335549-335885 bp Feature: gene Location: 335968-336102 bp Feature: gene Location: 336105-337928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336369-337203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336369-337203 bp Feature: domain Description: Intron_maturas2 Location: 337272-337611 bp Feature: domain Description: Intron_maturas2 Location: 337272-33761 1 bp Feature: domain Description: HNHc Note: nucleases Location: 337749-337905 bp Feature: domain Description: HNHc Note: nucleases Location: 337749-337905 bp Feature: gene Location: 338504-338695 bp Feature: domain Description: CwlT_like Location: 338531-338684 bp Feature: domain Description: CwlT_like Location: 338531 -338684 bp Feature: gene Location: 338764-340560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339022-339727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339022-339727 bp Feature: domain Description: HNHc Note: nucleases Location: 340288-340423 bp Feature: domain Description: HNHc Note: nucleases Location: 340288-340423 bp Feature: gene Location: 340872-341090 bp Feature: gene Location: 341333-341500 bp Feature: domain Description: CwlT_like Location: 341375-341483 bp Feature: domain Description: CwlT_like Location: 341 375-341 483 bp Feature: gene Location: 341616-342593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341664-341778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 664-341 778 bp Feature: domain Description: HNHc Note: nucleases Location: 342339-342477 bp Feature: domain Description: HNHc Note: nucleases Location: 342339-342477 bp Feature: gene Location: 342460-343386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342718-343309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34271 8-343309 bp Feature: gene Location: 344096-345094 bp Feature: domain Description: CwlT_like Location: 344948-345071 bp Feature: domain Description: CwlT_like Location: 344948-345071 bp Feature: gene Location: 345091-349095 bp Feature: domain Description: TrbL Location: 345580-345853 bp Feature: domain Description: TrbL Location: 345580-345853 bp Feature: gene Location: 400935-401336 bp Feature: gene Location: 401350-401532 bp Feature: domain Description: E1_enzyme_family Location: 401398-401515 bp Feature: domain Description: E1 _enzyme_family Location: 401 398-401 51 5 bp Feature: gene Location: 402101-404041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402431-403268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402431 -403268 bp Feature: domain Description: Intron_maturas2 Location: 403400-403649 bp Feature: domain Description: Intron_maturas2 Location: 403400-403649 bp Feature: domain Description: HNHc Note: nucleases Location: 403835-403988 bp Feature: domain Description: HNHc Note: nucleases Location: 403835-403988 bp Feature: gene Location: 404365-404847 bp Feature: domain Description: PRTRC_ThiF Location: 404380-404818 bp Feature: domain Description: PRTRC_ThiF Location: 404380-40481 8 bp Feature: gene Location: 404867-405238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534), YdiL (COG1266), DUF2325 (pfam10087), NlpD (COG0739), Spr (COG0791), Intron_maturas2 (pfam01348), CwlT_like, TrbL (pfam04610)
E1_enzyme_family (cl22428), PRTRC_ThiF (TIGR03736)

Seq: JABWHT010000008.1 Bacillus thuringiensis strain FDAARGOS_800 plasmid unnamed4 tig00000015_pilon, whole genome shotgun sequence (111156 bp)
Overview 1 RT 1: 30869-39768 bp 2 RT 2: 92548-96308 bp 3 RT 3: 109285-111153 bp Neighborhood of RT #1 [30869, 39836] RVT-GII GIIM DDE_Tnp_1 DDE_Tnp_1 RVT-GII GIIM DDE_Tnp_Tn3 Neighborhood of RT #2 [92548, 96361] DDE_Tnp_1 RVT-GII GIIM AAA_10 Neighborhood of RT #3 [109285, 111153] RVT-GII GIIM Feature: gene Location: 30869-31234 bp Feature: gene Location: 31505-31816 bp Feature: gene Location: 32041-33372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32350-32989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 350-32 989 bp Feature: domain Description: GIIM Note: maturase Location: 33064-33289 bp Feature: domain Description: GIIM Note: maturase Location: 33064-332 89 bp Feature: gene Location: 33522-33701 bp Feature: gene Location: 33853-34923 bp Feature: domain Description: DDE_Tnp_1 Location: 34222-34909 bp Feature: domain Description: DDE_Tnp_1 Location: 342 2 2 -34909 bp Feature: gene Location: 35487-36539 bp Feature: domain Description: DDE_Tnp_1 Location: 35841-36525 bp Feature: domain Description: DDE_Tnp_1 Location: 35841-3652 5 bp Feature: gene Location: 36691-36870 bp Feature: gene Location: 37020-38351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37329-37968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3732 9-37968 bp Feature: domain Description: GIIM Note: maturase Location: 38043-38268 bp Feature: domain Description: GIIM Note: maturase Location: 38043-382 68 bp Feature: gene Location: 38645-38878 bp Feature: gene Location: 39027-39836 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39174-39768 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39174-39768 bp Feature: gene Location: 92548-93618 bp Feature: domain Description: DDE_Tnp_1 Location: 92917-93604 bp Feature: domain Description: DDE_Tnp_1 Location: 92 917-93604 bp Feature: gene Location: 93770-93949 bp Feature: gene Location: 94099-95430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94408-95047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94408-95047 bp Feature: domain Description: GIIM Note: maturase Location: 95122-95347 bp Feature: domain Description: GIIM Note: maturase Location: 9512 2 -95347 bp Feature: gene Location: 95655-95966 bp Feature: gene Location: 96131-96361 bp Feature: domain Description: AAA_10 Location: 96140-96308 bp Feature: domain Description: AAA_10 Location: 96140-96308 bp Feature: gene Location: 109285-109470 bp Feature: gene Location: 109731-110042 bp Feature: gene Location: 110267-110956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110279-110573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102 79-110573 bp Feature: domain Description: GIIM Note: maturase Location: 110648-110873 bp Feature: domain Description: GIIM Note: maturase Location: 110648-110873 bp Feature: gene Location: 110974-111153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DDE_Tnp_Tn3 (pfam01526), AAA_10 (pfam12846)

Seq: JABWHT010000004.1 Bacillus thuringiensis strain FDAARGOS_800 tig00000001_pilon, whole genome shotgun sequence (6135235 bp)
Overview 1 RT 1: 91958-96861 bp 2 RT 2: 721073-726532 bp 3 RT 3: 1263298-1267697 bp 4 RT 4: 1400819-1405061 bp 5 RT 5: 1581279-1585651 bp 6 RT 6: 2632658-2637182 bp 7 RT 7: 2647519-2665406 bp 8 RT 8: 2696679-2702135 bp 9 RT 9: 2712107-2719637 bp 10 RT 10: 3089810-3098202 bp 11 RT 11: 3303958-3310976 bp 12 RT 12: 3353760-3357589 bp 13 RT 13: 3762507-3767333 bp 14 RT 14: 4214996-4219709 bp 15 RT 15: 4250761-4255410 bp 16 RT 16: 4320731-4324456 bp 17 RT 17: 4334828-4340508 bp 18 RT 18: 4352800-4363790 bp 19 RT 19: 4459085-4468903 bp 20 RT 20: 4553950-4557500 bp 21 RT 21: 4736076-4739751 bp 22 RT 22: 4756866-4760869 bp 23 RT 23: 5976017-5980442 bp Neighborhood of RT #1 [91958, 96866] DDE_Tnp_1 RVT-GII GIIM glgA Neighborhood of RT #2 [721073, 726543] DDE_Tnp_1 RVT-GII GIIM PRK08645 Neighborhood of RT #3 [1263298, 1267697] DDE_Tnp_1 RVT-GII GIIM TatD_DNAse Neighborhood of RT #4 [1400819, 1405069] PcpA_N_like PcpA_C_like RVT-GII HNHc PcpA_C_like YpfH Neighborhood of RT #5 [1581279, 1585680] DDE_Tnp_1 RVT-GII GIIM PI-PLCc_BcPLC_like Neighborhood of RT #6 [2632658, 2637193] RimL RVT-GII Intron_maturas2 HNHc Lysozyme_like YxeA Neighborhood of RT #7 [2647519, 2665438] Sfp PRK12467 RVT-GII GIIM PRK12467 PRK12467 A_NRPS_alphaAR PP-binding PRK12316 Neighborhood of RT #8 [2696679, 2702135] HTH_23 RVT-GII HNHc EFh_HEF_SCGN Neighborhood of RT #9 [2712107, 2719637] phage_arpU RVT-GII HNHc exospor_lead C1q Neighborhood of RT #10 [3089810, 3098210] Sipho_tail tape_meas_TP901 COG5283 RVT-GII HNHc PhageMin_Tail Smc PhageMin_Tail Neighborhood of RT #11 [3303958, 3310976] RVT-GII HNHc YopX RVT-GII HNHc Neighborhood of RT #12 [3353760, 3357603] PBP2_LTTR_substrate RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #13 [3762507, 3767455] YppF DUF1798 RVT-GII HNHc DEDD_Tnp_IS110 COG3547 Neighborhood of RT #14 [4214996, 4219939] PRK06930 recU RVT-GII HNHc KOG4080 Neighborhood of RT #15 [4250761, 4255424] AraC YdeE RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #16 [4320731, 4324456] Peptidases_S8_Subtilisin_subset RVT-GII RVT-GII Neighborhood of RT #17 [4334828, 4340522] DUF2935 DUF2935 RVT-GII Intron_maturas2 HNHc Spore_YhaL MhpC Neighborhood of RT #18 [4352800, 4363810] Ntn_PVA ETR_like RVT-GII HNHc InsQ RVT-GII HNHc PRK12856 DUF4028 Neighborhood of RT #19 [4459085, 4468917] PRK12467 SDR_e1 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #20 [4553950, 4557514] RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #21 [4736076, 4739765] RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #22 [4756866, 4760869] COG5152 RVT-GII HNHc YopX Neighborhood of RT #23 [5976017, 5980486] DDE_Tnp_1 RVT-GII GIIM AlsT Feature: gene Location: 91958-93028 bp Feature: domain Description: DDE_Tnp_1 Location: 92327-93014 bp Feature: domain Description: DDE_Tnp_1 Location: 923 27-93 014 bp Feature: gene Location: 93180-93359 bp Feature: gene Location: 93509-94840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93818-94457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 818-94457 bp Feature: domain Description: GIIM Note: maturase Location: 94532-94757 bp Feature: domain Description: GIIM Note: maturase Location: 9453 2-94757 bp Feature: gene Location: 95065-95376 bp Feature: gene Location: 95538-96866 bp Feature: domain Description: glgA Location: 95544-96861 bp Feature: domain Description: glgA Location: 95544-96861 bp Feature: gene Location: 721073-722131 bp Feature: domain Description: DDE_Tnp_1 Location: 721430-722117 bp Feature: domain Description: DDE_Tnp_1 Location: 72143 0-722117 bp Feature: gene Location: 722283-722462 bp Feature: gene Location: 722612-723943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722921-723560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722921-723 560 bp Feature: domain Description: GIIM Note: maturase Location: 723635-723860 bp Feature: domain Description: GIIM Note: maturase Location: 723 63 5-723 860 bp Feature: gene Location: 724210-724473 bp Feature: gene Location: 724711-726543 bp Feature: domain Description: PRK08645 Location: 724714-726532 bp Feature: domain Description: PRK08645 Location: 724714-72653 2 bp Feature: gene Location: 1263298-1263432 bp Feature: domain Description: DDE_Tnp_1 Location: 1263319-1263418 bp Feature: domain Description: DDE_Tnp_1 Location: 1263 3 19-1263 418 bp Feature: gene Location: 1263584-1263763 bp Feature: gene Location: 1263913-1265244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264222-1264861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264222-1264861 bp Feature: domain Description: GIIM Note: maturase Location: 1264936-1265161 bp Feature: domain Description: GIIM Note: maturase Location: 126493 6-1265161 bp Feature: gene Location: 1265687-1266421 bp Feature: domain Description: TatD_DNAse Location: 1265705-1266416 bp Feature: domain Description: TatD_DNAse Location: 1265705-1266416 bp Feature: gene Location: 1266918-1267697 bp Feature: gene Location: 1400819-1401496 bp Feature: domain Description: PcpA_N_like Location: 1400840-1401206 bp Feature: domain Description: PcpA_N_like Location: 1400840-1401206 bp Feature: domain Description: PcpA_C_like Location: 1401275-1401482 bp Feature: domain Description: PcpA_C_like Location: 1401275-1401482 bp Feature: gene Location: 1401735-1401953 bp Feature: gene Location: 1402265-1404061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402523-1403228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1402523 -1403 228 bp Feature: domain Description: HNHc Note: nucleases Location: 1403789-1403924 bp Feature: domain Description: HNHc Note: nucleases Location: 1403 789-1403 924 bp Feature: gene Location: 1404200-1404436 bp Feature: domain Description: PcpA_C_like Location: 1404206-1404413 bp Feature: domain Description: PcpA_C_like Location: 1404206-1404413 bp Feature: gene Location: 1404461-1405069 bp Feature: domain Description: YpfH Location: 1404473-1405061 bp Feature: domain Description: YpfH Location: 1404473 -1405061 bp Feature: gene Location: 1581279-1582337 bp Feature: domain Description: DDE_Tnp_1 Location: 1581636-1582323 bp Feature: domain Description: DDE_Tnp_1 Location: 158163 6-15823 23 bp Feature: gene Location: 1582489-1582668 bp Feature: gene Location: 1582818-1584149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583127-1583766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583 127-1583 766 bp Feature: domain Description: GIIM Note: maturase Location: 1583841-1584066 bp Feature: domain Description: GIIM Note: maturase Location: 1583 841-1584066 bp Feature: gene Location: 1584416-1584679 bp Feature: gene Location: 1584781-1585680 bp Feature: domain Description: PI-PLCc_BcPLC_like Location: 1584997-1585651 bp Feature: domain Description: PI-PLCc_BcPLC_like Location: 1584997-1585651 bp Feature: gene Location: 2632658-2633164 bp Feature: domain Description: RimL Location: 2632667-2633162 bp Feature: domain Description: RimL Location: 263 2667-263 3 162 bp Feature: gene Location: 2633533-2633664 bp Feature: gene Location: 2633666-2635489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2633930-2634764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 3 93 0-263 4764 bp Feature: domain Description: Intron_maturas2 Location: 2634833-2635172 bp Feature: domain Description: Intron_maturas2 Location: 263 483 3 -263 5172 bp Feature: domain Description: HNHc Note: nucleases Location: 2635310-2635466 bp Feature: domain Description: HNHc Note: nucleases Location: 263 53 10-263 5466 bp Feature: gene Location: 2636065-2636646 bp Feature: domain Description: Lysozyme_like Location: 2636200-2636635 bp Feature: domain Description: Lysozyme_like Location: 263 6200-263 663 5 bp Feature: gene Location: 2637062-2637193 bp Feature: domain Description: YxeA Location: 2637089-2637182 bp Feature: domain Description: YxeA Location: 263 7089-263 7182 bp Feature: gene Location: 2647519-2648223 bp Feature: domain Description: Sfp Location: 2647549-2648137 bp Feature: domain Description: Sfp Location: 2647549-264813 7 bp Feature: gene Location: 2648586-2656634 bp Feature: domain Description: PRK12467 Location: 2648589-2656224 bp Feature: domain Description: PRK12467 Location: 2648589-2656224 bp Feature: gene Location: 2656779-2658110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657088-2657727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2657088-2657727 bp Feature: domain Description: GIIM Note: maturase Location: 2657802-2658027 bp Feature: domain Description: GIIM Note: maturase Location: 2657802-2658027 bp Feature: gene Location: 2658260-2658439 bp Feature: gene Location: 2658569-2665438 bp Feature: domain Description: PRK12467 Location: 2658632-2661404 bp Feature: domain Description: PRK12467 Location: 265863 2-2661404 bp Feature: domain Description: PRK12467 Location: 2661416-2664536 bp Feature: domain Description: PRK12467 Location: 2661416-266453 6 bp Feature: domain Description: A_NRPS_alphaAR Location: 2664545-2664662 bp Feature: domain Description: A_NRPS_alphaAR Location: 2664545-2664662 bp Feature: domain Description: PP-binding Location: 2664722-2664911 bp Feature: domain Description: PP-binding Location: 2664722-2664911 bp Feature: domain Description: PRK12316 Location: 2664926-2665406 bp Feature: domain Description: PRK123 16 Location: 2664926-2665406 bp Feature: gene Location: 2696679-2697047 bp Feature: domain Description: HTH_23 Location: 2696769-2696892 bp Feature: domain Description: HTH_23 Location: 2696769-2696892 bp Feature: gene Location: 2697199-2697336 bp Feature: gene Location: 2697655-2699454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2697952-2698645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2697952-2698645 bp Feature: domain Description: HNHc Note: nucleases Location: 2699203-2699341 bp Feature: domain Description: HNHc Note: nucleases Location: 2699203 -26993 41 bp Feature: gene Location: 2700252-2700734 bp Feature: domain Description: EFh_HEF_SCGN Location: 2700330-2700585 bp Feature: domain Description: EFh_HEF_SCGN Location: 27003 3 0-2700585 bp Feature: gene Location: 2701251-2702135 bp Feature: gene Location: 2712107-2712589 bp Feature: domain Description: phage_arpU Location: 2712128-2712551 bp Feature: domain Description: phage_arpU Location: 2712128-2712551 bp Feature: gene Location: 2713964-2714275 bp Feature: gene Location: 2714421-2716220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2714718-2715411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2714718-2715411 bp Feature: domain Description: HNHc Note: nucleases Location: 2715969-2716107 bp Feature: domain Description: HNHc Note: nucleases Location: 2715969-2716107 bp Feature: gene Location: 2718077-2718709 bp Feature: domain Description: exospor_lead Location: 2718164-2718218 bp Feature: domain Description: exospor_lead Location: 2718164-2718218 bp Feature: domain Description: C1q Location: 2718341-2718704 bp Feature: domain Description: C1q Location: 27183 41-2718704 bp Feature: gene Location: 2719173-2719637 bp Feature: gene Location: 3089810-3091294 bp Feature: domain Description: Sipho_tail Location: 3089879-3091292 bp Feature: domain Description: Sipho_tail Location: 3 089879-3 091292 bp Feature: gene Location: 3091306-3093855 bp Feature: domain Description: tape_meas_TP901 Location: 3091396-3091831 bp Feature: domain Description: tape_meas_TP901 Location: 3 0913 96-3 09183 1 bp Feature: domain Description: COG5283 Location: 3092251-3092899 bp Feature: domain Description: COG5283 Location: 3 092251-3 092899 bp Feature: gene Location: 3093965-3095734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3094223-3094919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 094223 -3 094919 bp Feature: domain Description: HNHc Note: nucleases Location: 3095480-3095618 bp Feature: domain Description: HNHc Note: nucleases Location: 3 095480-3 095618 bp Feature: gene Location: 3096444-3096710 bp Feature: domain Description: PhageMin_Tail Location: 3096492-3096612 bp Feature: domain Description: PhageMin_Tail Location: 3 096492-3 096612 bp Feature: gene Location: 3096891-3098210 bp Feature: domain Description: Smc Location: 3096948-3097629 bp Feature: domain Description: Smc Location: 3 096948-3 097629 bp Feature: domain Description: PhageMin_Tail Location: 3097794-3098202 bp Feature: domain Description: PhageMin_Tail Location: 3 097794-3 098202 bp Feature: gene Location: 3303958-3304560 bp Feature: gene Location: 3304616-3304783 bp Feature: gene Location: 3304810-3306609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305107-3305800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 05107-3 3 05800 bp Feature: domain Description: HNHc Note: nucleases Location: 3306358-3306496 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 063 58-3 3 06496 bp Feature: gene Location: 3307328-3307747 bp Feature: domain Description: YopX Location: 3307388-3307739 bp Feature: domain Description: YopX Location: 3 3 073 88-3 3 0773 9 bp Feature: gene Location: 3308000-3309799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3308297-3308990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 08297-3 3 08990 bp Feature: domain Description: HNHc Note: nucleases Location: 3309548-3309686 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 09548-3 3 09686 bp Feature: gene Location: 3310514-3310657 bp Feature: gene Location: 3310722-3310976 bp Feature: gene Location: 3353760-3354005 bp Feature: domain Description: PBP2_LTTR_substrate Location: 3353766-3354000 bp Feature: domain Description: PBP2_LTTR_substrate Location: 3 3 53 766-3 3 54000 bp Feature: gene Location: 3354185-3354496 bp Feature: gene Location: 3354721-3356052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3355030-3355669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 5503 0-3 3 55669 bp Feature: domain Description: GIIM Note: maturase Location: 3355744-3355969 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 55744-3 3 55969 bp Feature: gene Location: 3356202-3356381 bp Feature: gene Location: 3356533-3357603 bp Feature: domain Description: DDE_Tnp_1 Location: 3356902-3357589 bp Feature: domain Description: DDE_Tnp_1 Location: 3 3 56902-3 3 57589 bp Feature: gene Location: 3762507-3762698 bp Feature: domain Description: YppF Location: 3762510-3762681 bp Feature: domain Description: YppF Location: 3 762510-3 762681 bp Feature: gene Location: 3762725-3763030 bp Feature: domain Description: DUF1798 Location: 3762740-3763022 bp Feature: domain Description: DUF1798 Location: 3 762740-3 763 022 bp Feature: gene Location: 3763137-3764906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3763395-3764091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 763 3 95-3 764091 bp Feature: domain Description: HNHc Note: nucleases Location: 3764652-3764790 bp Feature: domain Description: HNHc Note: nucleases Location: 3 764652-3 764790 bp Feature: gene Location: 3765691-3765933 bp Feature: gene Location: 3766226-3767455 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3766241-3766724 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3 766241-3 766724 bp Feature: domain Description: COG3547 Location: 3766952-3767333 bp Feature: domain Description: COG3 547 Location: 3 766952-3 7673 3 3 bp Feature: gene Location: 4214996-4215505 bp Feature: domain Description: PRK06930 Location: 4214999-4215500 bp Feature: domain Description: PRK0693 0 Location: 4214999-4215500 bp Feature: gene Location: 4215961-4216542 bp Feature: domain Description: recU Location: 4216003-4216525 bp Feature: domain Description: recU Location: 4216003 -4216525 bp Feature: gene Location: 4216606-4218405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4216903-4217596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4216903 -4217596 bp Feature: domain Description: HNHc Note: nucleases Location: 4218154-4218292 bp Feature: domain Description: HNHc Note: nucleases Location: 4218154-4218292 bp Feature: gene Location: 4219123-4219596 bp Feature: gene Location: 4219631-4219939 bp Feature: domain Description: KOG4080 Location: 4219643-4219709 bp Feature: domain Description: KOG4080 Location: 4219643 -4219709 bp Feature: gene Location: 4250761-4251663 bp Feature: domain Description: AraC Location: 4250782-4251085 bp Feature: domain Description: AraC Location: 4250782-4251085 bp Feature: domain Description: YdeE Location: 4251160-4251661 bp Feature: domain Description: YdeE Location: 4251160-4251661 bp Feature: gene Location: 4252006-4252317 bp Feature: gene Location: 4252542-4253873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4252851-4253490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4252851-4253 490 bp Feature: domain Description: GIIM Note: maturase Location: 4253565-4253790 bp Feature: domain Description: GIIM Note: maturase Location: 4253 565-4253 790 bp Feature: gene Location: 4254023-4254202 bp Feature: gene Location: 4254354-4255424 bp Feature: domain Description: DDE_Tnp_1 Location: 4254723-4255410 bp Feature: domain Description: DDE_Tnp_1 Location: 4254723 -4255410 bp Feature: gene Location: 4320731-4321516 bp Feature: gene Location: 4321532-4322503 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 4321751-4322399 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 43 21751-43 223 99 bp Feature: gene Location: 4323051-4323536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323057-4323357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 23 057-43 23 3 57 bp Feature: gene Location: 4323611-4323877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4323629-4323848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 23 629-43 23 848 bp Feature: gene Location: 4324013-4324165 bp Feature: gene Location: 4324187-4324456 bp Feature: gene Location: 4334828-4335580 bp Feature: gene Location: 4335778-4336629 bp Feature: domain Description: DUF2935 Location: 4335844-4336186 bp Feature: domain Description: DUF293 5 Location: 43 3 5844-43 3 6186 bp Feature: domain Description: DUF2935 Location: 4336231-4336579 bp Feature: domain Description: DUF293 5 Location: 43 3 623 1-43 3 6579 bp Feature: gene Location: 4336762-4338585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4337026-4337860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 7026-43 3 7860 bp Feature: domain Description: Intron_maturas2 Location: 4337929-4338268 bp Feature: domain Description: Intron_maturas2 Location: 43 3 7929-43 3 8268 bp Feature: domain Description: HNHc Note: nucleases Location: 4338406-4338562 bp Feature: domain Description: HNHc Note: nucleases Location: 43 3 8406-43 3 8562 bp Feature: gene Location: 4339371-4339571 bp Feature: domain Description: Spore_YhaL Location: 4339383-4339536 bp Feature: domain Description: Spore_YhaL Location: 43 3 93 83 -43 3 953 6 bp Feature: gene Location: 4339650-4340522 bp Feature: domain Description: MhpC Location: 4339794-4340508 bp Feature: domain Description: MhpC Location: 43 3 9794-43 40508 bp Feature: gene Location: 4352800-4353819 bp Feature: domain Description: Ntn_PVA Location: 4352839-4353739 bp Feature: domain Description: Ntn_PVA Location: 43 5283 9-43 53 73 9 bp Feature: gene Location: 4353937-4354920 bp Feature: domain Description: ETR_like Location: 4353958-4354894 bp Feature: domain Description: ETR_like Location: 43 53 958-43 54894 bp Feature: gene Location: 4355630-4357399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4355888-4356584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 55888-43 56584 bp Feature: domain Description: HNHc Note: nucleases Location: 4357145-4357283 bp Feature: domain Description: HNHc Note: nucleases Location: 43 57145-43 57283 bp Feature: gene Location: 4358025-4358153 bp Feature: gene Location: 4358153-4359283 bp Feature: domain Description: InsQ Location: 4358156-4359272 bp Feature: domain Description: InsQ Location: 43 58156-43 59272 bp Feature: gene Location: 4359970-4360116 bp Feature: gene Location: 4360148-4360336 bp Feature: gene Location: 4360400-4362199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4360697-4361390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 60697-43 613 90 bp Feature: domain Description: HNHc Note: nucleases Location: 4361948-4362086 bp Feature: domain Description: HNHc Note: nucleases Location: 43 61948-43 62086 bp Feature: gene Location: 4363153-4363464 bp Feature: domain Description: PRK12856 Location: 4363156-4363462 bp Feature: domain Description: PRK12856 Location: 43 63 156-43 63 462 bp Feature: gene Location: 4363595-4363810 bp Feature: domain Description: DUF4028 Location: 4363601-4363790 bp Feature: domain Description: DUF4028 Location: 43 63 601-43 63 790 bp Feature: gene Location: 4459085-4465255 bp Feature: domain Description: PRK12467 Location: 4459109-4463996 bp Feature: domain Description: PRK12467 Location: 4459109-4463 996 bp Feature: domain Description: SDR_e1 Location: 4464092-4464983 bp Feature: domain Description: SDR_e1 Location: 4464092-4464983 bp Feature: gene Location: 4465517-4465780 bp Feature: gene Location: 4466047-4467378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4466356-4466995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44663 56-4466995 bp Feature: domain Description: GIIM Note: maturase Location: 4467070-4467295 bp Feature: domain Description: GIIM Note: maturase Location: 4467070-4467295 bp Feature: gene Location: 4467528-4467707 bp Feature: gene Location: 4467859-4468917 bp Feature: domain Description: DDE_Tnp_1 Location: 4468216-4468903 bp Feature: domain Description: DDE_Tnp_1 Location: 4468216-4468903 bp Feature: gene Location: 4553950-4554078 bp Feature: gene Location: 4554114-4554377 bp Feature: gene Location: 4554644-4555975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4554953-4555592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4554953 -4555592 bp Feature: domain Description: GIIM Note: maturase Location: 4555667-4555892 bp Feature: domain Description: GIIM Note: maturase Location: 4555667-4555892 bp Feature: gene Location: 4556125-4556304 bp Feature: gene Location: 4556456-4557514 bp Feature: domain Description: DDE_Tnp_1 Location: 4556813-4557500 bp Feature: domain Description: DDE_Tnp_1 Location: 4556813 -4557500 bp Feature: gene Location: 4736076-4736339 bp Feature: gene Location: 4736347-4736658 bp Feature: gene Location: 4736883-4738214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4737192-4737831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473 7192-473 783 1 bp Feature: domain Description: GIIM Note: maturase Location: 4737906-4738131 bp Feature: domain Description: GIIM Note: maturase Location: 473 7906-473 813 1 bp Feature: gene Location: 4738364-4738543 bp Feature: gene Location: 4738695-4739765 bp Feature: domain Description: DDE_Tnp_1 Location: 4739064-4739751 bp Feature: domain Description: DDE_Tnp_1 Location: 473 9064-473 9751 bp Feature: gene Location: 4756866-4757042 bp Feature: gene Location: 4757080-4757217 bp Feature: domain Description: COG5152 Location: 4757092-4757188 bp Feature: domain Description: COG5152 Location: 4757092-4757188 bp Feature: gene Location: 4757466-4759265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4757763-4758456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4757763 -4758456 bp Feature: domain Description: HNHc Note: nucleases Location: 4759014-4759152 bp Feature: domain Description: HNHc Note: nucleases Location: 4759014-4759152 bp Feature: gene Location: 4759984-4760400 bp Feature: domain Description: YopX Location: 4760116-4760395 bp Feature: domain Description: YopX Location: 4760116-47603 95 bp Feature: gene Location: 4760609-4760869 bp Feature: gene Location: 5976017-5977087 bp Feature: domain Description: DDE_Tnp_1 Location: 5976386-5977073 bp Feature: domain Description: DDE_Tnp_1 Location: 59763 86-5977073 bp Feature: gene Location: 5977239-5977418 bp Feature: gene Location: 5977568-5978899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977877-5978516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977877-5978516 bp Feature: domain Description: GIIM Note: maturase Location: 5978591-5978816 bp Feature: domain Description: GIIM Note: maturase Location: 5978591-5978816 bp Feature: gene Location: 5979124-5979435 bp Feature: gene Location: 5979518-5980486 bp Feature: domain Description: AlsT Location: 5979524-5980442 bp Feature: domain Description: AlsT Location: 5979524-5980442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), glgA (TIGR02095), PRK08645 (bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed), TatD_DNAse (cd01310), PcpA_N_like (cd08346), PcpA_C_like (cd08347), HNHc (smart00507), YpfH (COG0400)
PI-PLCc_BcPLC_like (cd08586), RimL (COG1670), Intron_maturas2 (pfam01348), Lysozyme_like (pfam13702), YxeA (COG5294), Sfp (COG2091), PRK12467 (peptide synthase; Provisional), A_NRPS_alphaAR (cd17647), PP-binding (pfam00550), PRK12316 (peptide synthase; Provisional)
HTH_23 (pfam13384), EFh_HEF_SCGN (cd16178), phage_arpU (TIGR01637), exospor_lead (TIGR03720), C1q (pfam00386), Sipho_tail (pfam05709), tape_meas_TP901 (TIGR01760), COG5283 (Phage-related tail protein ), PhageMin_Tail (pfam10145), Smc (COG1196)
YopX (pfam09643), PBP2_LTTR_substrate (cd05466), YppF (pfam14178), DUF1798 (pfam08807), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), PRK06930 (positive control sigma-like factor; Validated), recU (TIGR00648), KOG4080 (KOG4080, Mitochondrial ribosomal protein L32 ), AraC (COG2207)
YdeE (COG3708), Peptidases_S8_Subtilisin_subset (cd07477), DUF2935 (pfam11155), Spore_YhaL (pfam14147), MhpC (COG0596), Ntn_PVA (cd00542), ETR_like (cd05282), InsQ (COG0675), PRK12856 (hypothetical protein; Provisional), DUF4028 (pfam13220)
SDR_e1 (cd05235), COG5152 (Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers ), AlsT (COG1115)

Seq: JABWHT010000005.1 Bacillus thuringiensis strain FDAARGOS_800 tig00000002_pilon, whole genome shotgun sequence (82142 bp)
Overview 1 RT 1: 33737-37285 bp Neighborhood of RT #1 [33737, 37285] RVT-GII HNHc Feature: gene Location: 33737-33994 bp Feature: gene Location: 34025-34330 bp Feature: gene Location: 35049-36629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35346-36039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3534 6-36039 bp Feature: gene Location: 36602-36847 bp Feature: domain Description: HNHc Note: nucleases Location: 36635-36734 bp Feature: domain Description: HNHc Note: nucleases Location: 36635-36734 bp Feature: gene Location: 36965-37285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JABWHT010000007.1 Bacillus thuringiensis strain FDAARGOS_800 tig00000010_pilon, whole genome shotgun sequence (34646 bp)
Overview 1 RT 1: 270-3818 bp Neighborhood of RT #1 [270, 3818] HNHc RVT-GII Feature: gene Location: 270-590 bp Feature: gene Location: 708-953 bp Feature: domain Description: HNHc Note: nucleases Location: 741-840 bp Feature: domain Description: HNHc Note: nucleases Location: 741-840 bp Feature: gene Location: 926-2506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223-1916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223-1916 bp Feature: gene Location: 3225-3530 bp Feature: gene Location: 3561-3818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII