myRT

myRT report for GCA_013366875.1_ASM1336687v1

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Seq: JAADZZ010000011.1 Escherichia coli strain 19-53 assembly_contig_11, whole genome shotgun sequence (153867 bp)
Overview 1 RT 1: 146668-151007 bp Neighborhood of RT #1 [146668, 151198] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C rve Feature: gene Location: 146668-147015 bp Feature: domain Description: TnpB_IS66 Location: 146695-146986 bp Feature: domain Description: TnpB_IS66 Location: 1 46695-1 46986 bp Feature: gene Location: 147035-148474 bp Feature: domain Description: LZ_Tnp_IS66 Location: 147173-147398 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 471 73-1 47398 bp Feature: domain Description: zf-IS66 Location: 147419-147551 bp Feature: domain Description: zf-IS66 Location: 1 4741 9-1 47551 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147596-148433 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 47596-1 48433 bp Feature: gene Location: 148936-150168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149137-149791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 491 37-1 49791 bp Feature: domain Description: GIIM Note: maturase Location: 149869-150091 bp Feature: domain Description: GIIM Note: maturase Location: 1 49869-1 50091 bp Feature: gene Location: 150284-150430 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 150296-150407 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 50296-1 50407 bp Feature: gene Location: 150506-151198 bp Feature: domain Description: rve Location: 150641-151007 bp Feature: domain Description: rve Location: 1 50641 -1 51 007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), rve (pfam00665)

Seq: JAADZZ010000037.1 Escherichia coli strain 19-53 assembly_contig_37, whole genome shotgun sequence (25057 bp)
Overview 1 RT 1: 2-2213 bp Neighborhood of RT #1 [2, 2213] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 2-1654 bp Feature: RT Description: RVT_N Location: 59-296 bp Feature: RT Description: RVT_N Location: 59-2 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-995 bp Feature: domain Description: YkfC Location: 1127-1283 bp Feature: domain Description: YkfC Location: 112 7-12 83 bp Feature: domain Description: HNHc Note: nucleases Location: 1511-1655 bp Feature: domain Description: HNHc Note: nucleases Location: 1511-1655 bp Feature: gene Location: 1695-1835 bp Feature: gene Location: 1917-2213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)