myRT

myRT report for GCA_013366895.1_ASM1336689v1

Download annotations/find similar RTs

Seq: JAADZY010000010.1 Escherichia coli strain 19-241-2(3) assembly_contig_10, whole genome shotgun sequence (153868 bp)
Overview 1 RT 1: 146669-151008 bp Neighborhood of RT #1 [146669, 151199] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C rve Feature: gene Location: 146669-147016 bp Feature: domain Description: TnpB_IS66 Location: 146696-146987 bp Feature: domain Description: TnpB_IS66 Location: 1 46696-1 46987 bp Feature: gene Location: 147036-148475 bp Feature: domain Description: LZ_Tnp_IS66 Location: 147174-147399 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 471 74-1 47399 bp Feature: domain Description: zf-IS66 Location: 147420-147552 bp Feature: domain Description: zf-IS66 Location: 1 47420-1 47552 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147597-148434 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 47597-1 48434 bp Feature: gene Location: 148937-150169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149138-149792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 491 38-1 49792 bp Feature: domain Description: GIIM Note: maturase Location: 149870-150092 bp Feature: domain Description: GIIM Note: maturase Location: 1 49870-1 50092 bp Feature: gene Location: 150285-150431 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 150297-150408 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 50297-1 50408 bp Feature: gene Location: 150507-151199 bp Feature: domain Description: rve Location: 150642-151008 bp Feature: domain Description: rve Location: 1 50642-1 51 008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), rve (pfam00665)

Seq: JAADZY010000015.1 Escherichia coli strain 19-241-2(3) assembly_contig_15, whole genome shotgun sequence (89275 bp)
Overview 1 RT 1: 86710-89275 bp Neighborhood of RT #1 [86710, 89274] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 86710-86979 bp Feature: gene Location: 87460-87600 bp Feature: gene Location: 87622-89274 bp Feature: RT Description: RVT_N Location: 87679-87916 bp Feature: RT Description: RVT_N Location: 87679-87916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87967-88615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87967-88615 bp Feature: domain Description: YkfC Location: 88747-88903 bp Feature: domain Description: YkfC Location: 88747-88903 bp Feature: domain Description: HNHc Note: nucleases Location: 89131-89275 bp Feature: domain Description: HNHc Note: nucleases Location: 89131-892 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)