myRT

myRT report for GCA_013366925.1_ASM1336692v1

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Seq: JAALDK010000001.1 Paraburkholderia sp. JPY169 contig_1, whole genome shotgun sequence (6823646 bp)
Overview 1 RT 1: 193048-199743 bp 2 RT 2: 1917494-1924304 bp 3 RT 3: 4737617-4744287 bp 4 RT 4: 6690711-6695347 bp Neighborhood of RT #1 [193048, 199802] R_switched_YjbE PilA RVT-GII GIIM HNH PglL_A Wzy_C Wzy_C_2 NTP-PPase_RS21-C6_like Neighborhood of RT #2 [1917494, 1924360] AmpC DUF3471 RVT-GII GIIM COG3547 MFS_ExuT_GudP_like Neighborhood of RT #3 [4737617, 4744373] PRK09265 RVT_N RVT-GII GIIM HNHc Xcc1710_like ArnT Neighborhood of RT #4 [6690711, 6695361] RplQ RVT-GII GIIM CutA1 DsbD Feature: gene Location: 193048-193833 bp Feature: domain Description: R_switched_YjbE Location: 193165-193702 bp Feature: domain Description: R_switched_YjbE Location: 1 931 65-1 93702 bp Feature: gene Location: 193934-194614 bp Feature: domain Description: PilA Location: 194111-194414 bp Feature: domain Description: PilA Location: 1 941 1 1 -1 9441 4 bp Feature: gene Location: 196165-197484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196168-196771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 961 68-1 96771 bp Feature: domain Description: GIIM Note: maturase Location: 196822-197056 bp Feature: domain Description: GIIM Note: maturase Location: 1 96822-1 97056 bp Feature: domain Description: HNH Note: nucleases Location: 197308-197440 bp Feature: domain Description: HNH Note: nucleases Location: 1 97308-1 97440 bp Feature: gene Location: 197610-199394 bp Feature: domain Description: PglL_A Location: 198117-198189 bp Feature: domain Description: PglL_A Location: 1 981 1 7-1 981 89 bp Feature: domain Description: Wzy_C Location: 198237-198699 bp Feature: domain Description: Wzy_C Location: 1 98237-1 98699 bp Feature: domain Description: Wzy_C_2 Location: 198765-199266 bp Feature: domain Description: Wzy_C_2 Location: 1 98765-1 99266 bp Feature: gene Location: 199452-199802 bp Feature: domain Description: NTP-PPase_RS21-C6_like Location: 199476-199743 bp Feature: domain Description: NTP-PPase_RS21 -C6_like Location: 1 99476-1 99743 bp Feature: gene Location: 1917494-1919032 bp Feature: domain Description: AmpC Location: 1917539-1918622 bp Feature: domain Description: AmpC Location: 1 91 7539-1 91 8622 bp Feature: domain Description: DUF3471 Location: 1918736-1918949 bp Feature: domain Description: DUF3471 Location: 1 91 8736-1 91 8949 bp Feature: gene Location: 1919159-1919305 bp Feature: gene Location: 1919649-1920962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919922-1920576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 9922-1 920576 bp Feature: domain Description: GIIM Note: maturase Location: 1920660-1920864 bp Feature: domain Description: GIIM Note: maturase Location: 1 920660-1 920864 bp Feature: gene Location: 1921689-1922795 bp Feature: domain Description: COG3547 Location: 1921794-1922739 bp Feature: domain Description: COG3547 Location: 1 921 794-1 922739 bp Feature: gene Location: 1923041-1924360 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1923101-1924304 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 9231 01 -1 924304 bp Feature: gene Location: 4737617-4738864 bp Feature: domain Description: PRK09265 Location: 4737632-4738850 bp Feature: domain Description: PRK09265 Location: 4737632-4738850 bp Feature: gene Location: 4738937-4739143 bp Feature: gene Location: 4739248-4740849 bp Feature: RT Description: RVT_N Location: 4739251-4739449 bp Feature: RT Description: RVT_N Location: 4739251 -4739449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4739494-4740142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4739494-47401 42 bp Feature: domain Description: GIIM Note: maturase Location: 4740196-4740427 bp Feature: domain Description: GIIM Note: maturase Location: 47401 96-4740427 bp Feature: domain Description: HNHc Note: nucleases Location: 4740640-4740811 bp Feature: domain Description: HNHc Note: nucleases Location: 4740640-474081 1 bp Feature: gene Location: 4742132-4742506 bp Feature: domain Description: Xcc1710_like Location: 4742171-4742495 bp Feature: domain Description: Xcc1 71 0_like Location: 47421 71 -4742495 bp Feature: gene Location: 4742619-4744373 bp Feature: domain Description: ArnT Location: 4742646-4744287 bp Feature: domain Description: ArnT Location: 4742646-4744287 bp Feature: gene Location: 6690711-6691103 bp Feature: domain Description: RplQ Location: 6690714-6691059 bp Feature: domain Description: RplQ Location: 669071 4-6691 059 bp Feature: gene Location: 6691632-6691811 bp Feature: gene Location: 6691877-6692848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6691886-6692501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6691 886-6692501 bp Feature: domain Description: GIIM Note: maturase Location: 6692561-6692759 bp Feature: domain Description: GIIM Note: maturase Location: 6692561 -6692759 bp Feature: gene Location: 6693168-6693488 bp Feature: domain Description: CutA1 Location: 6693177-6693462 bp Feature: domain Description: CutA1 Location: 66931 77-6693462 bp Feature: gene Location: 6693547-6695361 bp Feature: domain Description: DsbD Location: 6693580-6695347 bp Feature: domain Description: DsbD Location: 6693580-6695347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YjbE (TIGR03717), PilA (COG4969), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), NTP-PPase_RS21-C6_like (cd11537), AmpC (COG1680)
DUF3471 (pfam11954), COG3547 (Transposase ), MFS_ExuT_GudP_like (cd17319), PRK09265 (aminotransferase AlaT; Validated), RVT_N (pfam13655), HNHc (smart00507), Xcc1710_like (cd05560), ArnT (COG1807), RplQ (COG0203), CutA1 (pfam03091)
DsbD (pfam02683)

Seq: JAALDK010000003.1 Paraburkholderia sp. JPY169 contig_3, whole genome shotgun sequence (855103 bp)
Overview 1 RT 1: 149816-155106 bp 2 RT 2: 498142-501786 bp 3 RT 3: 509279-514980 bp 4 RT 4: 524286-529410 bp 5 RT 5: 618931-628089 bp Neighborhood of RT #1 [149816, 155106] RVT-GII GIIM RVT-GII RVT-GII group_II_RT_mat Neighborhood of RT #2 [498142, 501788] DsbA_DsbC_DsbG DDE_Tnp_IS240 RVT-GII GIIM Rve Neighborhood of RT #3 [509279, 515048] Rve RVT-GII GIIM Rve DPPIV_N Peptidase_S9 Neighborhood of RT #4 [524286, 529421] COG2192 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [618931, 628193] IS5 RVT-GII GIIM PRiA4_ORF3 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PinE Zn_ribbon_recom InsE RVT_N RVT-GII COG3415 DDE_3 Feature: gene Location: 149816-150709 bp Feature: gene Location: 150753-151193 bp Feature: gene Location: 151259-152092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151262-151673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512 62 -151673 bp Feature: domain Description: GIIM Note: maturase Location: 151733-151934 bp Feature: domain Description: GIIM Note: maturase Location: 151733-151934 bp Feature: gene Location: 152041-152613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152374-152518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 374-152 518 bp Feature: gene Location: 152764-152913 bp Feature: gene Location: 152917-153459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153193-153367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153193-153367 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 153373-153454 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 153373-153454 bp Feature: gene Location: 153802-154176 bp Feature: gene Location: 154630-155106 bp Feature: gene Location: 498142-498963 bp Feature: domain Description: DsbA_DsbC_DsbG Location: 498271-498928 bp Feature: domain Description: DsbA_DsbC_DsbG Location: 4982 71-49892 8 bp Feature: gene Location: 499316-499768 bp Feature: domain Description: DDE_Tnp_IS240 Location: 499406-499721 bp Feature: domain Description: DDE_Tnp_IS2 40 Location: 499406-49972 1 bp Feature: gene Location: 499840-501006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500044-500701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500044-500701 bp Feature: domain Description: GIIM Note: maturase Location: 500779-500983 bp Feature: domain Description: GIIM Note: maturase Location: 500779-500983 bp Feature: gene Location: 501392-501574 bp Feature: gene Location: 501621-501788 bp Feature: domain Description: Rve Location: 501666-501786 bp Feature: domain Description: Rve Location: 501666-501786 bp Feature: gene Location: 509279-509542 bp Feature: domain Description: Rve Location: 509285-509540 bp Feature: domain Description: Rve Location: 5092 85-509540 bp Feature: gene Location: 510141-510413 bp Feature: gene Location: 510571-511737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510775-511432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510775-511432 bp Feature: domain Description: GIIM Note: maturase Location: 511510-511714 bp Feature: domain Description: GIIM Note: maturase Location: 511510-511714 bp Feature: gene Location: 512142-512552 bp Feature: domain Description: Rve Location: 512217-512454 bp Feature: domain Description: Rve Location: 512 2 17-512 454 bp Feature: gene Location: 512733-515048 bp Feature: domain Description: DPPIV_N Location: 513177-514167 bp Feature: domain Description: DPPIV_N Location: 513177-514167 bp Feature: domain Description: Peptidase_S9 Location: 514407-514980 bp Feature: domain Description: Peptidase_S9 Location: 514407-514980 bp Feature: gene Location: 524286-526019 bp Feature: domain Description: COG2192 Location: 524289-526005 bp Feature: domain Description: COG2 192 Location: 52 42 89-52 6005 bp Feature: gene Location: 526401-527291 bp Feature: domain Description: PHA02517 Location: 526467-527277 bp Feature: domain Description: PHA02 517 Location: 52 6467-52 72 77 bp Feature: gene Location: 527388-528638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527592-528252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 7592 -52 82 52 bp Feature: domain Description: GIIM Note: maturase Location: 528333-528564 bp Feature: domain Description: GIIM Note: maturase Location: 52 8333-52 8564 bp Feature: gene Location: 528867-529013 bp Feature: gene Location: 529140-529421 bp Feature: domain Description: InsE Location: 529155-529410 bp Feature: domain Description: InsE Location: 52 9155-52 9410 bp Feature: gene Location: 618931-619095 bp Feature: gene Location: 619119-619469 bp Feature: domain Description: IS5 Location: 619128-619464 bp Feature: domain Description: IS5 Location: 61912 8-619464 bp Feature: gene Location: 619503-620342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619518-619791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619518-619791 bp Feature: domain Description: GIIM Note: maturase Location: 619842-620076 bp Feature: domain Description: GIIM Note: maturase Location: 619842 -62 0076 bp Feature: gene Location: 620362-620958 bp Feature: domain Description: PRiA4_ORF3 Location: 620419-620920 bp Feature: domain Description: PRiA4_ORF3 Location: 62 0419-62 092 0 bp Feature: gene Location: 620970-622514 bp Feature: domain Description: LZ_Tnp_IS66 Location: 621048-621291 bp Feature: domain Description: LZ_Tnp_IS66 Location: 62 1048-62 12 91 bp Feature: domain Description: zf-IS66 Location: 621312-621438 bp Feature: domain Description: zf-IS66 Location: 62 1312 -62 1438 bp Feature: domain Description: DDE_Tnp_IS66 Location: 621486-622341 bp Feature: domain Description: DDE_Tnp_IS66 Location: 62 1486-62 2 341 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 622362-622473 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62 2 362 -62 2 473 bp Feature: gene Location: 623260-625353 bp Feature: domain Description: PinE Location: 623302-623884 bp Feature: domain Description: PinE Location: 62 3302 -62 3884 bp Feature: domain Description: Zn_ribbon_recom Location: 624244-624418 bp Feature: domain Description: Zn_ribbon_recom Location: 62 42 44-62 4418 bp Feature: gene Location: 625530-625844 bp Feature: domain Description: InsE Location: 625533-625818 bp Feature: domain Description: InsE Location: 62 5533-62 5818 bp Feature: gene Location: 625762-626769 bp Feature: RT Description: RVT_N Location: 625837-626074 bp Feature: RT Description: RVT_N Location: 62 5837-62 6074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626125-626497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 612 5-62 6497 bp Feature: gene Location: 627208-627684 bp Feature: domain Description: COG3415 Location: 627223-627643 bp Feature: domain Description: COG3415 Location: 62 72 2 3-62 7643 bp Feature: gene Location: 627147-628193 bp Feature: domain Description: DDE_3 Location: 627687-628089 bp Feature: domain Description: DDE_3 Location: 62 7687-62 8089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), DsbA_DsbC_DsbG (cd03020), DDE_Tnp_IS240 (pfam13610), Rve (COG3316), DPPIV_N (pfam00930), Peptidase_S9 (pfam00326), COG2192 (Predicted carbamoyl transferase, NodU family ), PHA02517 (putative transposase OrfB; Reviewed)
InsE (COG2963), IS5 (COG3039), PRiA4_ORF3 (pfam07929), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655)
DDE_3 (pfam13358), COG3415 (Transposase )