myRT

myRT report for GCA_013368465.1_ASM1336846v1

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Seq: JAAMPZ010000002.1 Citrobacter freundii strain YDC638-3 1, whole genome shotgun sequence (5100877 bp)
Overview 1 RT 1: 70171-76650 bp 2 RT 2: 765195-768634 bp 3 RT 3: 1870392-1877844 bp 4 RT 4: 2972490-2977428 bp 5 RT 5: 3177611-3181148 bp 6 RT 6: 3817609-3822240 bp Neighborhood of RT #1 [70171, 76652] SymE_toxin arc_metj RVT-UG8 RVT-UG3 PRK11462 Neighborhood of RT #2 [765195, 768699] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1870392, 1877844] DEDD_Tnp_IS110 Transposase_20 PHA02517 RVT-GII GIIM PRK09692 RVT-Retrons Neighborhood of RT #4 [2972490, 2977550] DEDD_Tnp_IS110 Transposase_20 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #5 [3177611, 3181213] COG4453 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #6 [3817609, 3822290] InsE RVT-GII GIIM PHA02517 ZnMc_MMP_like_1 Feature: gene Location: 70171-70461 bp Feature: domain Description: SymE_toxin Location: 70222-70363 bp Feature: domain Description: SymE_toxin Location: 70222-70363 bp Feature: gene Location: 70588-70779 bp Feature: domain Description: arc_metj Location: 70651-70759 bp Feature: domain Description: arc_metj Location: 70651 -70759 bp Feature: gene Location: 70913-72883 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 71426-71870 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 71 426-71 870 bp Feature: gene Location: 73445-74104 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 73733-74084 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 73733-74084 bp Feature: gene Location: 74858-75037 bp Feature: gene Location: 75270-76652 bp Feature: domain Description: PRK11462 Location: 75273-76650 bp Feature: domain Description: PRK1 1 462 Location: 75273-76650 bp Feature: gene Location: 765195-765356 bp Feature: gene Location: 765377-765781 bp Feature: domain Description: PHA02517 Location: 765380-765761 bp Feature: domain Description: PHA0251 7 Location: 765380-765761 bp Feature: gene Location: 765946-767469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766219-766951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76621 9-766951 bp Feature: domain Description: GIIM Note: maturase Location: 767026-767224 bp Feature: domain Description: GIIM Note: maturase Location: 767026-767224 bp Feature: gene Location: 767423-767848 bp Feature: gene Location: 768061-768699 bp Feature: domain Description: PHA02517 Location: 768298-768634 bp Feature: domain Description: PHA0251 7 Location: 768298-768634 bp Feature: gene Location: 1870392-1871750 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1870455-1870887 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 870455-1 870887 bp Feature: domain Description: Transposase_20 Location: 1871283-1871532 bp Feature: domain Description: Transposase_20 Location: 1 871 283-1 871 532 bp Feature: gene Location: 1871629-1872267 bp Feature: domain Description: PHA02517 Location: 1871866-1872202 bp Feature: domain Description: PHA0251 7 Location: 1 871 866-1 872202 bp Feature: gene Location: 1872859-1874382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873132-1873864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8731 32-1 873864 bp Feature: domain Description: GIIM Note: maturase Location: 1873939-1874137 bp Feature: domain Description: GIIM Note: maturase Location: 1 873939-1 8741 37 bp Feature: gene Location: 1874944-1875510 bp Feature: domain Description: PRK09692 Location: 1874947-1875499 bp Feature: domain Description: PRK09692 Location: 1 874947-1 875499 bp Feature: gene Location: 1875601-1875765 bp Feature: gene Location: 1875829-1876788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1876006-1876531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 876006-1 876531 bp Feature: gene Location: 1876807-1877010 bp Feature: gene Location: 1877500-1877844 bp Feature: gene Location: 2972490-2972654 bp Feature: gene Location: 2972668-2973906 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2972701-2973163 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2972701 -29731 63 bp Feature: domain Description: Transposase_20 Location: 2973493-2973745 bp Feature: domain Description: Transposase_20 Location: 2973493-2973745 bp Feature: gene Location: 2974257-2975189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2974356-2974953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2974356-2974953 bp Feature: gene Location: 2975194-2976819 bp Feature: domain Description: COG3950 Location: 2975368-2976721 bp Feature: domain Description: COG3950 Location: 2975368-2976721 bp Feature: gene Location: 2976819-2977550 bp Feature: domain Description: TIGR02646 Location: 2976918-2977428 bp Feature: domain Description: TIGR02646 Location: 297691 8-2977428 bp Feature: gene Location: 3177611-3177880 bp Feature: domain Description: COG4453 Location: 3177617-3177872 bp Feature: domain Description: COG4453 Location: 31 7761 7-31 77872 bp Feature: gene Location: 3178095-3178550 bp Feature: domain Description: PHA02517 Location: 3178098-3178506 bp Feature: domain Description: PHA0251 7 Location: 31 78098-31 78506 bp Feature: gene Location: 3178673-3180196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3178946-3179678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 78946-31 79678 bp Feature: domain Description: GIIM Note: maturase Location: 3179753-3179951 bp Feature: domain Description: GIIM Note: maturase Location: 31 79753-31 79951 bp Feature: gene Location: 3180150-3180575 bp Feature: gene Location: 3180788-3181213 bp Feature: domain Description: PHA02517 Location: 3180809-3181148 bp Feature: domain Description: PHA0251 7 Location: 31 80809-31 81 1 48 bp Feature: gene Location: 3817609-3817893 bp Feature: domain Description: InsE Location: 3817621-3817882 bp Feature: domain Description: InsE Location: 381 7621 -381 7882 bp Feature: gene Location: 3817932-3818159 bp Feature: gene Location: 3818954-3820477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3819227-3819959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 9227-381 9959 bp Feature: domain Description: GIIM Note: maturase Location: 3820034-3820232 bp Feature: domain Description: GIIM Note: maturase Location: 3820034-3820232 bp Feature: gene Location: 3820682-3821014 bp Feature: domain Description: PHA02517 Location: 3820688-3821003 bp Feature: domain Description: PHA0251 7 Location: 3820688-3821 003 bp Feature: gene Location: 3821310-3822290 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 3821730-3822240 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 3821 730-3822240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SymE_toxin (pfam08845), arc_metj (LOAD_arc_metj), RVT-UG8, RVT-UG3, PRK11462 (putative transporter; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)
PRK09692 (Integrase; provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), COG4453 (Uncharacterized conserved protein, DUF1778 family ), InsE (COG2963), ZnMc_MMP_like_1 (cd04279)