myRT

myRT report for GCA_013368845.2_ASM1336884v2

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Seq: JABWNF020000014.1 Escherichia sp. 93.0724 MOD1-EC7252_14_length_85817_cov_42.2, whole genome shotgun sequence (85817 bp)
Overview 1 RT 1: 2093-7358 bp Neighborhood of RT #1 [2093, 7366] RVT-GII RVT-GII GIIM aconitase_1 ribA Feature: gene Location: 2093-2287 bp Feature: gene Location: 2395-2616 bp Feature: gene Location: 2706-2912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2715-2907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 5-2907 bp Feature: gene Location: 2913-3746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2916-3333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 6-3333 bp Feature: domain Description: GIIM Note: maturase Location: 3381-3600 bp Feature: domain Description: GIIM Note: maturase Location: 3381 -3600 bp Feature: gene Location: 3974-6649 bp Feature: domain Description: aconitase_1 Location: 4028-6644 bp Feature: domain Description: aconitase_1 Location: 4028-6644 bp Feature: gene Location: 6713-7366 bp Feature: domain Description: ribA Location: 6788-7358 bp Feature: domain Description: ribA Location: 6788-7358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aconitase_1 (TIGR01341), ribA (TIGR00505)

Seq: JABWNF020000016.1 Escherichia sp. 93.0724 MOD1-EC7252_16_length_81924_cov_42.4, whole genome shotgun sequence (81924 bp)
Overview 1 RT 1: 59501-63434 bp Neighborhood of RT #1 [59501, 63619] DEDD_Tnp_IS110 RVT-Retrons COG3950 COG3950 TIGR02646 Feature: gene Location: 59501-59818 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 59540-59768 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 59540-59768 bp Feature: gene Location: 59708-59971 bp Feature: gene Location: 60382-61317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60484-61084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60484-61084 bp Feature: gene Location: 61314-62966 bp Feature: domain Description: COG3950 Location: 61512-61665 bp Feature: domain Description: COG3950 Location: 61512 -61665 bp Feature: domain Description: COG3950 Location: 61893-62814 bp Feature: domain Description: COG3950 Location: 61893-62 814 bp Feature: gene Location: 62969-63619 bp Feature: domain Description: TIGR02646 Location: 63035-63434 bp Feature: domain Description: TIGR02 646 Location: 63035-63434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JABWNF020000006.1 Escherichia sp. 93.0724 MOD1-EC7252_6_length_99109_cov_44.3, whole genome shotgun sequence (99109 bp)
Overview 1 RT 1: 95713-98600 bp Neighborhood of RT #1 [95713, 99106] DinI RVT-Retrons Feature: gene Location: 95713-95946 bp Feature: domain Description: DinI Location: 95755-95941 bp Feature: domain Description: DinI Location: 95755-95941 bp Feature: gene Location: 96122-97180 bp Feature: gene Location: 97652-99106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97976-98600 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 97976-98600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons