myRT

myRT report for GCA_013368865.2_ASM1336886v2

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Seq: JABWNV020000026.1 Escherichia sp. 12.2612 MOD1-EC7076_26_length_83958_cov_54.8, whole genome shotgun sequence (83958 bp)
Overview 1 RT 1: 55811-61613 bp Neighborhood of RT #1 [55811, 61613] ribA aconitase_1 RVT-GII GIIM Feature: gene Location: 55811-56464 bp Feature: domain Description: ribA Location: 55886-56456 bp Feature: domain Description: ribA Location: 55886-56456 bp Feature: gene Location: 56528-59203 bp Feature: domain Description: aconitase_1 Location: 56582-59198 bp Feature: domain Description: aconitase_1 Location: 56582-591 98 bp Feature: gene Location: 59431-60783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59752-60370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59752-60370 bp Feature: domain Description: GIIM Note: maturase Location: 60418-60637 bp Feature: domain Description: GIIM Note: maturase Location: 6041 8-60637 bp Feature: gene Location: 60766-61362 bp Feature: gene Location: 61443-61613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388)

Seq: JABWNV020000054.1 Escherichia sp. 12.2612 MOD1-EC7076_54_length_20940_cov_174.4, whole genome shotgun sequence (20940 bp)
Overview 1 RT 1: 17953-20938 bp Neighborhood of RT #1 [17953, 20938] RVT_N RVT-GII Y2_Tnp Feature: gene Location: 17953-18210 bp Feature: gene Location: 18636-18776 bp Feature: gene Location: 18798-19790 bp Feature: domain Description: RVT_N Location: 18855-19092 bp Feature: domain Description: RVT_N Location: 18855-19092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19143-19782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19143-19782 bp Feature: gene Location: 19970-20743 bp Feature: domain Description: Y2_Tnp Location: 19982-20522 bp Feature: domain Description: Y2 _Tnp Location: 19982 -2 052 2 bp Feature: gene Location: 20750-20938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, Y2_Tnp (pfam04986)

Seq: JABWNV020000006.1 Escherichia sp. 12.2612 MOD1-EC7076_6_length_156955_cov_56.8, whole genome shotgun sequence (156955 bp)
Overview 1 RT 1: 59774-64258 bp Neighborhood of RT #1 [59774, 64350] PRK09692 RVT-UG15 Psu PRK09678 PRK09678 Feature: gene Location: 59774-60073 bp Feature: gene Location: 60137-61306 bp Feature: domain Description: PRK09692 Location: 60146-61289 bp Feature: domain Description: PRK09692 Location: 60146-61289 bp Feature: gene Location: 61324-62934 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 61732-62155 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 6173 2-62155 bp Feature: gene Location: 63258-63830 bp Feature: domain Description: Psu Location: 63276-63813 bp Feature: domain Description: Psu Location: 63 276-63 813 bp Feature: gene Location: 63904-64350 bp Feature: domain Description: PRK09678 Location: 63913-63985 bp Feature: domain Description: PRK09678 Location: 63 913 -63 985 bp Feature: domain Description: PRK09678 Location: 64108-64258 bp Feature: domain Description: PRK09678 Location: 64108-64258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG15, Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional)