myRT

myRT report for GCA_013368935.2_ASM1336893v2

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Seq: JABWMX020000017.1 Escherichia sp. 93.1447 MOD1-EC7292_17_length_98967_cov_56.3, whole genome shotgun sequence (98967 bp)
Overview 1 RT 1: 62860-68324 bp Neighborhood of RT #1 [62860, 68371] Phage_int_SAM_2 Integrase_1 ABC_ATPase ABC_ATPase RVT-Retrons RfaF Feature: gene Location: 62860-63744 bp Feature: domain Description: Phage_int_SAM_2 Location: 62863-63133 bp Feature: domain Description: Phage_int_SAM_2 Location: 62863-631 33 bp Feature: domain Description: Integrase_1 Location: 63166-63610 bp Feature: domain Description: Integrase_1 Location: 631 66-6361 0 bp Feature: gene Location: 64186-65514 bp Feature: domain Description: ABC_ATPase Location: 64240-64333 bp Feature: domain Description: ABC_ATPase Location: 64240-64333 bp Feature: domain Description: ABC_ATPase Location: 64729-64924 bp Feature: domain Description: ABC_ATPase Location: 64729-64924 bp Feature: gene Location: 65511-66482 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65643-66210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65643-6621 0 bp Feature: gene Location: 66670-66891 bp Feature: gene Location: 67313-68371 bp Feature: domain Description: RfaF Location: 67466-68324 bp Feature: domain Description: RfaF Location: 67466-68324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), ABC_ATPase (pfam09818), RVT-Retrons, RfaF (COG0859)

Seq: JABWMX020000002.1 Escherichia sp. 93.1447 MOD1-EC7292_2_length_189372_cov_57.4, whole genome shotgun sequence (189372 bp)
Overview 1 RT 1: 16043-21846 bp Neighborhood of RT #1 [16043, 21846] ribA aconitase_1 RVT-GII GIIM Feature: gene Location: 16043-16696 bp Feature: domain Description: ribA Location: 16118-16688 bp Feature: domain Description: ribA Location: 16118-16688 bp Feature: gene Location: 16760-19435 bp Feature: domain Description: aconitase_1 Location: 16814-19430 bp Feature: domain Description: aconitase_1 Location: 16814-19430 bp Feature: gene Location: 19727-21016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20048-20666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0048-2 0666 bp Feature: domain Description: GIIM Note: maturase Location: 20714-20933 bp Feature: domain Description: GIIM Note: maturase Location: 2 0714-2 0933 bp Feature: gene Location: 21035-21595 bp Feature: gene Location: 21676-21846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388)

Seq: JABWMX020000072.1 Escherichia sp. 93.1447 MOD1-EC7292_72_length_9687_cov_54.9, whole genome shotgun sequence (9687 bp)
Overview 1 RT 1: 5345-9195 bp Neighborhood of RT #1 [5345, 9195] RVT-Retrons Feature: gene Location: 5345-5500 bp Feature: gene Location: 6195-6941 bp Feature: gene Location: 6958-8181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7111-7726 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7111-7726 bp Feature: gene Location: 9028-9195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JABWMX020000007.1 Escherichia sp. 93.1447 MOD1-EC7292_7_length_144906_cov_147.0, whole genome shotgun sequence (144906 bp)
Overview 1 RT 1: 88698-92456 bp Neighborhood of RT #1 [88698, 92521] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 88698-88883 bp Feature: gene Location: 89607-90053 bp Feature: domain Description: PHA02517 Location: 89610-90051 bp Feature: domain Description: PHA02517 Location: 89610-90051 bp Feature: gene Location: 90170-91693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90443-91175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 904 4 3-91175 bp Feature: domain Description: GIIM Note: maturase Location: 91250-91448 bp Feature: domain Description: GIIM Note: maturase Location: 91250-914 4 8 bp Feature: gene Location: 91647-92072 bp Feature: gene Location: 92285-92521 bp Feature: domain Description: PHA02517 Location: 92324-92456 bp Feature: domain Description: PHA02517 Location: 92324 -924 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)