myRT

myRT report for GCA_013369065.2_ASM1336906v2

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Seq: JABWNT020000001.1 Escherichia sp. 14.0982 MOD1-EC7096_1_length_339007_cov_83.4, whole genome shotgun sequence (339007 bp)
Overview 1 RT 1: 19838-25641 bp 2 RT 2: 258761-264138 bp Neighborhood of RT #1 [19838, 25641] ribA aconitase_1 RVT-GII GIIM Neighborhood of RT #2 [258761, 264272] RfaF RVT-Retrons ABC_ATPase ABC_ATPase Phage_int_SAM_2 Integrase_1 Feature: gene Location: 19838-20491 bp Feature: domain Description: ribA Location: 19913-20483 bp Feature: domain Description: ribA Location: 1 991 3-20483 bp Feature: gene Location: 20555-23230 bp Feature: domain Description: aconitase_1 Location: 20609-23225 bp Feature: domain Description: aconitase_1 Location: 20609-23225 bp Feature: gene Location: 23522-24811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23843-24461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23843-24461 bp Feature: domain Description: GIIM Note: maturase Location: 24509-24728 bp Feature: domain Description: GIIM Note: maturase Location: 24509-24728 bp Feature: gene Location: 24830-25390 bp Feature: gene Location: 25471-25641 bp Feature: gene Location: 258761-259819 bp Feature: domain Description: RfaF Location: 258914-259772 bp Feature: domain Description: RfaF Location: 25891 4-259772 bp Feature: gene Location: 260241-260462 bp Feature: gene Location: 260650-261621 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260782-261349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260782-261 349 bp Feature: gene Location: 261618-262946 bp Feature: domain Description: ABC_ATPase Location: 261672-261765 bp Feature: domain Description: ABC_ATPase Location: 261 672-261 765 bp Feature: domain Description: ABC_ATPase Location: 262161-262356 bp Feature: domain Description: ABC_ATPase Location: 2621 61 -262356 bp Feature: gene Location: 263388-264272 bp Feature: domain Description: Phage_int_SAM_2 Location: 263391-263661 bp Feature: domain Description: Phage_int_SAM_2 Location: 263391 -263661 bp Feature: domain Description: Integrase_1 Location: 263694-264138 bp Feature: domain Description: Integrase_1 Location: 263694-2641 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388), RfaF (COG0859), RVT-Retrons, ABC_ATPase (pfam09818), Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835)