myRT

myRT report for GCA_013369155.2_ASM1336915v2

Download annotations/find similar RTs

Seq: JABWMS020000013.1 Escherichia sp. 94.0001 MOD1-EC7315_13_length_91037_cov_151.4, whole genome shotgun sequence (91037 bp)
Overview 1 RT 1: 27743-31868 bp Neighborhood of RT #1 [27743, 31993] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 27743-28270 bp Feature: domain Description: PRK13732 Location: 27746-28268 bp Feature: domain Description: PRK1 3732 Location: 27746-28268 bp Feature: gene Location: 28391-28864 bp Feature: gene Location: 29438-31105 bp Feature: RT Description: RVT_N Location: 29486-29723 bp Feature: RT Description: RVT_N Location: 29486-29723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29774-30416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29774-3041 6 bp Feature: domain Description: GIIM Note: maturase Location: 30467-30701 bp Feature: domain Description: GIIM Note: maturase Location: 30467-30701 bp Feature: domain Description: HNHc Note: nucleases Location: 30911-31070 bp Feature: domain Description: HNHc Note: nucleases Location: 3091 1 -31 070 bp Feature: gene Location: 31383-31574 bp Feature: gene Location: 31571-31993 bp Feature: domain Description: DUF1380 Location: 31574-31868 bp Feature: domain Description: DUF1 380 Location: 31 574-31 868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: JABWMS020000030.1 Escherichia sp. 94.0001 MOD1-EC7315_30_length_52873_cov_110.1, whole genome shotgun sequence (52873 bp)
Overview 1 RT 1: 9051-12932 bp Neighborhood of RT #1 [9051, 12937] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9051-9509 bp Feature: domain Description: dut Location: 9057-9504 bp Feature: domain Description: dut Location: 9057-9504 bp Feature: gene Location: 9616-10212 bp Feature: domain Description: slmA Location: 9622-10198 bp Feature: domain Description: slmA Location: 962 2 -10198 bp Feature: gene Location: 10256-11215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10391-10940 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10391-10940 bp Feature: gene Location: 11513-12169 bp Feature: domain Description: pyrE Location: 11531-12164 bp Feature: domain Description: pyrE Location: 11531-12 164 bp Feature: gene Location: 12221-12937 bp Feature: domain Description: rph Location: 12224-12932 bp Feature: domain Description: rph Location: 12 2 2 4-12 932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576), slmA (PRK09480)

Seq: JABWMS020000003.1 Escherichia sp. 94.0001 MOD1-EC7315_3_length_207669_cov_86.4, whole genome shotgun sequence (207669 bp)
Overview 1 RT 1: 204879-207476 bp Neighborhood of RT #1 [204879, 207476] Cys_rich_CPCC RVT-GII Feature: gene Location: 204879-205088 bp Feature: gene Location: 205088-205573 bp Feature: domain Description: Cys_rich_CPCC Location: 205373-205466 bp Feature: domain Description: Cys_rich_CPCC Location: 2053 73 -205466 bp Feature: gene Location: 205977-207245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206430-207087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20643 0-207087 bp Feature: gene Location: 207303-207476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cys_rich_CPCC (pfam14206), RVT-GII