myRT

myRT report for GCA_013369985.1_ASM1336998v1

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Seq: JABXEG010000025.1 Escherichia coli strain ME2L-18-90 NODE_25_length_78656_cov_18.390569, whole genome shotgun sequence (78656 bp)
Overview 1 RT 1: 43095-46847 bp Neighborhood of RT #1 [43095, 47056] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 43095-43328 bp Feature: domain Description: DinI Location: 43137-43323 bp Feature: domain Description: DinI Location: 431 37-43323 bp Feature: gene Location: 43497-43631 bp Feature: gene Location: 43807-44742 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43909-44503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43909-44503 bp Feature: gene Location: 44742-46376 bp Feature: domain Description: COG3950 Location: 44880-46338 bp Feature: domain Description: COG3950 Location: 44880-46338 bp Feature: gene Location: 46496-47056 bp Feature: domain Description: TIGR02646 Location: 46499-46847 bp Feature: domain Description: TIGR02646 Location: 46499-46847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JABXEG010000026.1 Escherichia coli strain ME2L-18-90 NODE_26_length_76764_cov_14.363545, whole genome shotgun sequence (76764 bp)
Overview 1 RT 1: 10388-15855 bp Neighborhood of RT #1 [10388, 15860] Phage_int_SAM_2 Integrase_1 RVT-UG12 cbl PRK11233 Feature: gene Location: 10388-11299 bp Feature: domain Description: Phage_int_SAM_2 Location: 10391-10661 bp Feature: domain Description: Phage_int_SAM_2 Location: 10391-10661 bp Feature: domain Description: Integrase_1 Location: 10694-11138 bp Feature: domain Description: Integrase_1 Location: 10694-11138 bp Feature: gene Location: 11608-11871 bp Feature: gene Location: 11868-13163 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12219-12654 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12 2 19-12 654 bp Feature: gene Location: 13891-14841 bp Feature: domain Description: cbl Location: 13894-14839 bp Feature: domain Description: cbl Location: 13894-14839 bp Feature: gene Location: 14943-15860 bp Feature: domain Description: PRK11233 Location: 14946-15855 bp Feature: domain Description: PRK112 33 Location: 14946-15855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), RVT-UG12, cbl (PRK12679), PRK11233 (nitrogen assimilation transcriptional regulator; Provisional)