myRT

myRT report for GCA_013371975.1_ASM1337197v1

Download annotations/find similar RTs

Seq: VOMD01000011.1 Paraburkholderia sp. JPY432 Contigs_011, whole genome shotgun sequence (209133 bp)
Overview 1 RT 1: 42266-44364 bp Neighborhood of RT #1 [42266, 44364] HTH_ARSR RVT-GII Feature: gene Location: 42266-42601 bp Feature: domain Description: HTH_ARSR Location: 42302-42512 bp Feature: domain Description: HTH_ARSR Location: 42302-4251 2 bp Feature: gene Location: 42600-42881 bp Feature: gene Location: 42868-43209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42922-43006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42922-43006 bp Feature: gene Location: 43468-43809 bp Feature: gene Location: 43978-44364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII

Seq: VOMD01000016.1 Paraburkholderia sp. JPY432 Contigs_016, whole genome shotgun sequence (163408 bp)
Overview 1 RT 1: 34281-40077 bp Neighborhood of RT #1 [34281, 40091] PRK05182 RplQ RVT-GII GIIM CutA1 DsbD Feature: gene Location: 34281-35258 bp Feature: domain Description: PRK05182 Location: 34293-35220 bp Feature: domain Description: PRK05182 Location: 342 93-352 2 0 bp Feature: gene Location: 35449-35841 bp Feature: domain Description: RplQ Location: 35452-35797 bp Feature: domain Description: RplQ Location: 35452 -35797 bp Feature: gene Location: 36292-37659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36625-37240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3662 5-372 40 bp Feature: domain Description: GIIM Note: maturase Location: 37300-37501 bp Feature: domain Description: GIIM Note: maturase Location: 37300-37501 bp Feature: gene Location: 37787-38218 bp Feature: domain Description: CutA1 Location: 37907-38192 bp Feature: domain Description: CutA1 Location: 37907-38192 bp Feature: gene Location: 38277-40091 bp Feature: domain Description: DsbD Location: 38310-40077 bp Feature: domain Description: DsbD Location: 38310-40077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05182 (DNA-directed RNA polymerase subunit alpha; Provisional), RplQ (COG0203), RVT-GII, GIIM (pfam08388), CutA1 (pfam03091), DsbD (pfam02683)

Seq: VOMD01000083.1 Paraburkholderia sp. JPY432 Contigs_083, whole genome shotgun sequence (6268 bp)
Overview 1 RT 1: 398-2215 bp Neighborhood of RT #1 [398, 2232] group_II_RT_mat RVT-GII GIIM DUF3757 Feature: gene Location: 398-1429 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 602-746 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 602-746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-959 bp Feature: domain Description: GIIM Note: maturase Location: 1010-1244 bp Feature: domain Description: GIIM Note: maturase Location: 1010-1244 bp Feature: gene Location: 1368-1676 bp Feature: gene Location: 1801-2232 bp Feature: domain Description: DUF3757 Location: 1870-2215 bp Feature: domain Description: DUF3 757 Location: 1870-2215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DUF3757 (pfam12582)

Seq: VOMD01000091.1 Paraburkholderia sp. JPY432 Contigs_091, whole genome shotgun sequence (4318 bp)
Overview 1 RT 1: 1688-4283 bp Neighborhood of RT #1 [1688, 4283] IS5 RVT_N RVT-GII IS5 Feature: gene Location: 1688-1927 bp Feature: domain Description: IS5 Location: 1694-1880 bp Feature: domain Description: IS5 Location: 1694 -1880 bp Feature: gene Location: 2213-2374 bp Feature: gene Location: 2605-3435 bp Feature: domain Description: RVT_N Location: 2614-2788 bp Feature: domain Description: RVT_N Location: 2614 -2788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2839-3388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2839-3388 bp Feature: gene Location: 3516-3983 bp Feature: domain Description: IS5 Location: 3621-3975 bp Feature: domain Description: IS5 Location: 3621-3975 bp Feature: gene Location: 4041-4283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII