myRT

myRT report for GCA_013372005.1_ASM1337200v1

Download annotations/find similar RTs

Seq: VOMC01000001.1 Paraburkholderia sp. JPY454 Contigs_001, whole genome shotgun sequence (399214 bp)
Overview 1 RT 1: 190501-193451 bp Neighborhood of RT #1 [190501, 193564] gram_neg_porins group_II_RT_mat RVT-GII APH Feature: gene Location: 190501-190713 bp Feature: domain Description: gram_neg_porins Location: 190516-190708 bp Feature: domain Description: gram_neg_porins Location: 1 9051 6-1 90708 bp Feature: gene Location: 191225-191764 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 191267-191642 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 91 267-1 91 642 bp Feature: gene Location: 191758-192042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191773-192037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 773-1 92037 bp Feature: gene Location: 192155-192664 bp Feature: gene Location: 192785-193564 bp Feature: domain Description: APH Location: 192866-193451 bp Feature: domain Description: APH Location: 1 92866-1 93451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gram_neg_porins (cd00342), group_II_RT_mat (TIGR04416), RVT-GII, APH (pfam01636)

Seq: VOMC01000080.1 Paraburkholderia sp. JPY454 Contigs_080, whole genome shotgun sequence (17581 bp)
Overview 1 RT 1: 11513-17452 bp Neighborhood of RT #1 [11513, 17452] YheO RVT-GII GIIM Haemagg_act Peptidase_M26_N Glug Glug Glug Glug Feature: gene Location: 11513-12142 bp Feature: domain Description: YheO Location: 11528-12131 bp Feature: domain Description: YheO Location: 1152 8-12 131 bp Feature: gene Location: 12639-12791 bp Feature: gene Location: 12931-14196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13180-13843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13180-13843 bp Feature: domain Description: GIIM Note: maturase Location: 13912-14128 bp Feature: domain Description: GIIM Note: maturase Location: 13912 -1412 8 bp Feature: gene Location: 14605-16998 bp Feature: domain Description: Haemagg_act Location: 14830-15067 bp Feature: domain Description: Haemagg_act Location: 14830-15067 bp Feature: domain Description: Peptidase_M26_N Location: 16042-16333 bp Feature: domain Description: Peptidase_M2 6_N Location: 16042 -16333 bp Feature: domain Description: Glug Location: 16360-16435 bp Feature: domain Description: Glug Location: 16360-16435 bp Feature: domain Description: Glug Location: 16444-16516 bp Feature: domain Description: Glug Location: 16444-16516 bp Feature: domain Description: Glug Location: 16534-16597 bp Feature: domain Description: Glug Location: 16534-16597 bp Feature: domain Description: Glug Location: 16630-16696 bp Feature: domain Description: Glug Location: 16630-16696 bp Feature: gene Location: 17231-17452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YheO (COG2964), RVT-GII, GIIM (pfam08388), Haemagg_act (smart00912), Peptidase_M26_N (pfam05342), Glug (pfam07581)

Seq: VOMC01000112.1 Paraburkholderia sp. JPY454 Contigs_112, whole genome shotgun sequence (8355 bp)
Overview 1 RT 1: 3-2041 bp Neighborhood of RT #1 [3, 2043] RVT-GII HTH_29 HTH_33 DDE_3 AcAcCoA_reduct Feature: gene Location: 3-383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-13 2 bp Feature: gene Location: 406-1458 bp Feature: domain Description: HTH_29 Location: 478-649 bp Feature: domain Description: HTH_29 Location: 478-649 bp Feature: domain Description: HTH_33 Location: 721-892 bp Feature: domain Description: HTH_3 3 Location: 721-892 bp Feature: domain Description: DDE_3 Location: 937-1357 bp Feature: domain Description: DDE_3 Location: 93 7-13 57 bp Feature: gene Location: 1486-2043 bp Feature: domain Description: AcAcCoA_reduct Location: 1498-2041 bp Feature: domain Description: AcAcCoA_reduct Location: 1498-2041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), AcAcCoA_reduct (TIGR01829)

Seq: VOMC01000128.1 Paraburkholderia sp. JPY454 Contigs_128, whole genome shotgun sequence (5672 bp)
Overview 1 RT 1: 1246-2967 bp Neighborhood of RT #1 [1246, 2967] Rve Rve RVT-GII Feature: gene Location: 1246-1644 bp Feature: domain Description: Rve Location: 1249-1606 bp Feature: domain Description: Rve Location: 124 9-1606 bp Feature: gene Location: 1710-1862 bp Feature: domain Description: Rve Location: 1776-1860 bp Feature: domain Description: Rve Location: 1776-1860 bp Feature: gene Location: 2032-2340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080-2167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080-2167 bp Feature: gene Location: 2349-2519 bp Feature: gene Location: 2647-2967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII

Seq: VOMC01000129.1 Paraburkholderia sp. JPY454 Contigs_129, whole genome shotgun sequence (5588 bp)
Overview 1 RT 1: 3285-5585 bp Neighborhood of RT #1 [3285, 5585] Rve RVT-GII GIIM Feature: gene Location: 3285-3671 bp Feature: domain Description: Rve Location: 3327-3570 bp Feature: domain Description: Rve Location: 3327-35 70 bp Feature: gene Location: 3721-3936 bp Feature: gene Location: 4080-5321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4284-4938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4284-4938 bp Feature: domain Description: GIIM Note: maturase Location: 5016-5244 bp Feature: domain Description: GIIM Note: maturase Location: 5 016-5 244 bp Feature: gene Location: 5346-5585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: VOMC01000130.1 Paraburkholderia sp. JPY454 Contigs_130, whole genome shotgun sequence (5587 bp)
Overview 1 RT 1: 1582-4056 bp Neighborhood of RT #1 [1582, 4127] RVT-GII GIIM Rve Feature: gene Location: 1582-1779 bp Feature: gene Location: 1867-2019 bp Feature: gene Location: 2415-3257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532-3177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2532-3177 bp Feature: gene Location: 3263-3562 bp Feature: domain Description: GIIM Note: maturase Location: 3266-3479 bp Feature: domain Description: GIIM Note: maturase Location: 326 6 -3479 bp Feature: gene Location: 3615-4127 bp Feature: domain Description: Rve Location: 3648-4056 bp Feature: domain Description: Rve Location: 36 48-4056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Rve (COG3316)

Seq: VOMC01000170.1 Paraburkholderia sp. JPY454 Contigs_170, whole genome shotgun sequence (2970 bp)
Overview 1 RT 1: 3-2810 bp Neighborhood of RT #1 [3, 2872] RVT-GII RVT-GII GIIM PaaI_thioesterase Feature: gene Location: 3-608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-603 bp Feature: gene Location: 633-1880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-1476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852-147 6 bp Feature: domain Description: GIIM Note: maturase Location: 1572-1782 bp Feature: domain Description: GIIM Note: maturase Location: 157 2-17 82 bp Feature: gene Location: 2612-2872 bp Feature: domain Description: PaaI_thioesterase Location: 2708-2810 bp Feature: domain Description: PaaI_thioesterase Location: 27 08-2810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PaaI_thioesterase (cd03443)

Seq: VOMC01000190.1 Paraburkholderia sp. JPY454 Contigs_190, whole genome shotgun sequence (1793 bp)
Overview 1 RT 1: 418-1549 bp Neighborhood of RT #1 [418, 1707] RVT-GII GIIM Feature: gene Location: 418-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673-1288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673-128 8 bp Feature: domain Description: GIIM Note: maturase Location: 1348-1549 bp Feature: domain Description: GIIM Note: maturase Location: 1348 -1549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VOMC01000225.1 Paraburkholderia sp. JPY454 Contigs_225, whole genome shotgun sequence (1071 bp)
Overview 1 RT 1: 3-639 bp Neighborhood of RT #1 [3, 1019] RVT-GII Feature: gene Location: 3-1019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII