myRT

myRT report for GCA_013373485.1_ASM1337348v1

Download annotations/find similar RTs

Seq: JABXHT010000059.1 Tenacibaculum sp. isolate HF-Dia23 c_000000011530, whole genome shotgun sequence (36240 bp)
Overview 1 RT 1: 306-4451 bp Neighborhood of RT #1 [306, 4462] RVT-Retrons holA HSDR_N_2 Feature: gene Location: 306-1154 bp Feature: gene Location: 1117-1470 bp Feature: gene Location: 1636-2685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1867-2419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 867-241 9 bp Feature: gene Location: 2796-3797 bp Feature: domain Description: holA Location: 2895-3786 bp Feature: domain Description: holA Location: 2895-3786 bp Feature: gene Location: 4094-4462 bp Feature: domain Description: HSDR_N_2 Location: 4124-4451 bp Feature: domain Description: HSDR_N_2 Location: 41 24-4451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, holA (TIGR01128)

Seq: JABXHT010000077.1 Tenacibaculum sp. isolate HF-Dia23 c_000000028775, whole genome shotgun sequence (15371 bp)
Overview 1 RT 1: 4027-12021 bp Neighborhood of RT #1 [4027, 12257] HsdR EcoEI_R_C RVT-Retrons DUF3387 McrB PRK11331 COG4127 PRK11331 Feature: gene Location: 4027-6408 bp Feature: domain Description: HsdR Location: 4030-5659 bp Feature: domain Description: HsdR Location: 4030-5659 bp Feature: domain Description: EcoEI_R_C Location: 5926-6391 bp Feature: domain Description: EcoEI_R_C Location: 592 6-6391 bp Feature: gene Location: 6443-7720 bp Feature: gene Location: 8020-9159 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8275-8899 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82 75-8899 bp Feature: gene Location: 9183-9371 bp Feature: domain Description: DUF3387 Location: 9231-9351 bp Feature: domain Description: DUF3387 Location: 92 31-9351 bp Feature: gene Location: 9456-12257 bp Feature: domain Description: McrB Location: 9498-10002 bp Feature: domain Description: McrB Location: 9498-10002 bp Feature: domain Description: PRK11331 Location: 10677-10977 bp Feature: domain Description: PRK11331 Location: 10677-10977 bp Feature: domain Description: COG4127 Location: 11079-11412 bp Feature: domain Description: COG412 7 Location: 11079-11412 bp Feature: domain Description: PRK11331 Location: 11505-12021 bp Feature: domain Description: PRK11331 Location: 11505-12 02 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdR (COG4096), EcoEI_R_C (pfam08463), RVT-Retrons, DUF3387 (pfam11867), McrB (COG4054), PRK11331 (5-methylcytosine-specific restriction enzyme subunit McrB; Provisional), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )