myRT

myRT report for GCA_013373675.1_ASM1337367v1

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Seq: JABXJH010000001.1 Bacteroides sp. L10-4 Scaffold1, whole genome shotgun sequence (217207 bp)
Overview 1 RT 1: 13531-17579 bp Neighborhood of RT #1 [13531, 17584] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 13531-13956 bp Feature: domain Description: Bac_Flav_CT_N Location: 13534-13936 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 3534-1 3936 bp Feature: gene Location: 13975-14463 bp Feature: gene Location: 14498-16309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14762-15584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4762-1 5584 bp Feature: domain Description: Intron_maturas2 Location: 15656-15965 bp Feature: domain Description: Intron_maturas2 Location: 1 5656-1 5965 bp Feature: gene Location: 16299-17006 bp Feature: domain Description: Bac_Flav_CT_N Location: 16422-16983 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 6422-1 6983 bp Feature: gene Location: 17009-17584 bp Feature: domain Description: TraO Location: 17084-17579 bp Feature: domain Description: TraO Location: 1 7084-1 7579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)

Seq: JABXJH010000101.1 Bacteroides sp. L10-4 Scaffold101, whole genome shotgun sequence (7447 bp)
Overview 1 RT 1: 3-3655 bp Neighborhood of RT #1 [3, 3903] RVT-GII GIIM SusD-like_2 SusD-like_2 Feature: gene Location: 3-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-954 bp Feature: domain Description: GIIM Note: maturase Location: 1008-1185 bp Feature: domain Description: GIIM Note: maturase Location: 1008-1185 bp Feature: gene Location: 1676-2008 bp Feature: gene Location: 2041-3903 bp Feature: domain Description: SusD-like_2 Location: 2371-2998 bp Feature: domain Description: SusD-like_2 Location: 2 371-2 998 bp Feature: domain Description: SusD-like_2 Location: 3229-3655 bp Feature: domain Description: SusD-like_2 Location: 32 2 9-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SusD-like_2 (pfam12771)

Seq: JABXJH010000122.1 Bacteroides sp. L10-4 Scaffold122, whole genome shotgun sequence (2493 bp)
Overview 1 RT 1: 94-2358 bp Neighborhood of RT #1 [94, 2378] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 94-369 bp Feature: gene Location: 576-2378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: domain Description: Intron_maturas2 Location: 1806-2061 bp Feature: domain Description: Intron_maturas2 Location: 1806-2061 bp Feature: domain Description: HNHc Note: nucleases Location: 2217-2358 bp Feature: domain Description: HNHc Note: nucleases Location: 2217-23 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABXJH010000124.1 Bacteroides sp. L10-4 Scaffold124, whole genome shotgun sequence (2417 bp)
Overview 1 RT 1: 344-1919 bp Neighborhood of RT #1 [344, 2296] RVT_N RVT-GII GIIM Feature: gene Location: 344-478 bp Feature: gene Location: 644-2296 bp Feature: domain Description: RVT_N Location: 698-941 bp Feature: domain Description: RVT_N Location: 698-94 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1634 bp Feature: domain Description: GIIM Note: maturase Location: 1688-1919 bp Feature: domain Description: GIIM Note: maturase Location: 1688-1919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JABXJH010000013.1 Bacteroides sp. L10-4 Scaffold13, whole genome shotgun sequence (83483 bp)
Overview 1 RT 1: 11595-16137 bp Neighborhood of RT #1 [11595, 16145] YgiQ HxlR RVT-GII GIIM DDE_Tnp_ISL3 Feature: gene Location: 11595-12482 bp Feature: domain Description: YgiQ Location: 11631-12441 bp Feature: domain Description: YgiQ Location: 11631-12441 bp Feature: gene Location: 12640-12993 bp Feature: domain Description: HxlR Location: 12667-12985 bp Feature: domain Description: HxlR Location: 12667-12985 bp Feature: gene Location: 13077-14345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13290-13947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13290-13947 bp Feature: domain Description: GIIM Note: maturase Location: 14028-14235 bp Feature: domain Description: GIIM Note: maturase Location: 14028-14235 bp Feature: gene Location: 14523-14861 bp Feature: gene Location: 15285-16145 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15351-16137 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15 35 1-16137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgiQ (COG1032), HxlR (pfam01638), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610)

Seq: JABXJH010000147.1 Bacteroides sp. L10-4 Scaffold147, whole genome shotgun sequence (688 bp)
Overview 1 RT 1: 82-523 bp Neighborhood of RT #1 [82, 687] RVT-GII GIIM Feature: gene Location: 82-687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-238 bp Feature: domain Description: GIIM Note: maturase Location: 292-523 bp Feature: domain Description: GIIM Note: maturase Location: 292-523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABXJH010000035.1 Bacteroides sp. L10-4 Scaffold35, whole genome shotgun sequence (51499 bp)
Overview 1 RT 1: 122-4539 bp Neighborhood of RT #1 [122, 4751] RVT_N RVT-GII GIIM YWFCY Relaxase Relaxase Feature: gene Location: 122-442 bp Feature: gene Location: 423-2126 bp Feature: domain Description: RVT_N Location: 495-732 bp Feature: domain Description: RVT_N Location: 495-7 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 83-1437 bp Feature: domain Description: GIIM Note: maturase Location: 1488-1722 bp Feature: domain Description: GIIM Note: maturase Location: 1488-17 22 bp Feature: gene Location: 2742-3464 bp Feature: domain Description: YWFCY Location: 2748-2925 bp Feature: domain Description: YWFCY Location: 27 48-2925 bp Feature: gene Location: 3501-4751 bp Feature: domain Description: Relaxase Location: 3675-3981 bp Feature: domain Description: Relaxase Location: 367 5-3981 bp Feature: domain Description: Relaxase Location: 4242-4539 bp Feature: domain Description: Relaxase Location: 4242-4539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: JABXJH010000042.1 Bacteroides sp. L10-4 Scaffold42, whole genome shotgun sequence (48436 bp)
Overview 1 RT 1: 25170-28623 bp Neighborhood of RT #1 [25170, 28623] RVT-DGRs Feature: gene Location: 25170-25484 bp Feature: gene Location: 25484-25876 bp Feature: gene Location: 25857-26897 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26064-26691 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26064-26691 bp Feature: gene Location: 26958-27152 bp Feature: gene Location: 27196-28623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JABXJH010000053.1 Bacteroides sp. L10-4 Scaffold53, whole genome shotgun sequence (28567 bp)
Overview 1 RT 1: 18788-26505 bp Neighborhood of RT #1 [18788, 26505] RVT-UG8 RVT-UG3 Doc Feature: gene Location: 18788-20434 bp Feature: gene Location: 20443-21168 bp Feature: gene Location: 21374-23593 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 21962-22415 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 219 62-22415 bp Feature: gene Location: 23590-25011 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 24037-24550 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 24037-24550 bp Feature: gene Location: 25035-25496 bp Feature: domain Description: Doc Location: 25083-25389 bp Feature: domain Description: Doc Location: 25083-25389 bp Feature: gene Location: 25489-26505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, Doc (COG3654)

Seq: JABXJH010000067.1 Bacteroides sp. L10-4 Scaffold67, whole genome shotgun sequence (18197 bp)
Overview 1 RT 1: 13814-18195 bp Neighborhood of RT #1 [13814, 18194] Mfd Mfd RVT-GII GIIM Feature: gene Location: 13814-13990 bp Feature: gene Location: 14240-17629 bp Feature: domain Description: Mfd Location: 14327-14942 bp Feature: domain Description: Mfd Location: 14327-14942 bp Feature: domain Description: Mfd Location: 15080-17555 bp Feature: domain Description: Mfd Location: 15080-17555 bp Feature: gene Location: 17781-18194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17793-17964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17793-17964 bp Feature: domain Description: GIIM Note: maturase Location: 18018-18195 bp Feature: domain Description: GIIM Note: maturase Location: 18018-18195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfd (COG1197), RVT-GII, GIIM (pfam08388)

Seq: JABXJH010000078.1 Bacteroides sp. L10-4 Scaffold78, whole genome shotgun sequence (13568 bp)
Overview 1 RT 1: 9082-13425 bp Neighborhood of RT #1 [9082, 13451] Relaxase Relaxase YWFCY RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9082-10350 bp Feature: domain Description: Relaxase Location: 9271-9859 bp Feature: domain Description: Relaxase Location: 9271-9859 bp Feature: domain Description: Relaxase Location: 9883-10117 bp Feature: domain Description: Relaxase Location: 9883-1011 7 bp Feature: gene Location: 10371-11102 bp Feature: domain Description: YWFCY Location: 10377-10554 bp Feature: domain Description: YWFCY Location: 10377-10554 bp Feature: gene Location: 11640-13451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11904-12726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11 904-12726 bp Feature: domain Description: Intron_maturas2 Location: 12801-13107 bp Feature: domain Description: Intron_maturas2 Location: 12801-13107 bp Feature: domain Description: HNHc Note: nucleases Location: 13281-13425 bp Feature: domain Description: HNHc Note: nucleases Location: 13281-13425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JABXJH010000009.1 Bacteroides sp. L10-4 Scaffold9, whole genome shotgun sequence (90946 bp)
Overview 1 RT 1: 65587-70574 bp Neighborhood of RT #1 [65587, 70606] HTH_17 RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like AAT_like Feature: gene Location: 65587-65880 bp Feature: domain Description: HTH_17 Location: 65710-65854 bp Feature: domain Description: HTH_17 Location: 65710-65854 bp Feature: gene Location: 66473-66703 bp Feature: gene Location: 66727-67575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66886-67408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66886-67408 bp Feature: gene Location: 67584-68807 bp Feature: domain Description: Arm-DNA-bind_5 Location: 67623-67884 bp Feature: domain Description: Arm-DNA-bind_5 Location: 67623-67884 bp Feature: domain Description: Phage_int_SAM_5 Location: 67920-68226 bp Feature: domain Description: Phage_int_SAM_5 Location: 67920-68226 bp Feature: domain Description: INTN1_C_like Location: 68277-68766 bp Feature: domain Description: INTN1_C_like Location: 68277-68766 bp Feature: gene Location: 69254-70606 bp Feature: domain Description: AAT_like Location: 69431-70574 bp Feature: domain Description: AAT_like Location: 69431-70574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), AAT_like (cd00609)