myRT

myRT report for GCA_013373795.1_ASM1337379v1

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Seq: JABWSX010000001.1 Bradyrhizobium sp. 66S1MB Bradyrhizobium_sp_66S1MB_Contig1, whole genome shotgun sequence (8740813 bp)
Overview 1 RT 1: 433119-443778 bp 2 RT 2: 6749679-6754002 bp 3 RT 3: 6775002-6779093 bp 4 RT 4: 6828459-6832361 bp Neighborhood of RT #1 [433119, 444041] DDE_Tnp_1_4 RVT-UG12 PLDc_Bfil_DEXD_like AAA_16 TPR TPR TPR_12 Neighborhood of RT #2 [6749679, 6754016] Transposase_mut RVT-GII COG3415 NodZ Neighborhood of RT #3 [6775002, 6779093] TnpB_IS66 InsE RVT-GII RVT-GII Neighborhood of RT #4 [6828459, 6832378] TnpB_IS66 COG3436 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 433119-433676 bp Feature: gene Location: 434417-435760 bp Feature: domain Description: DDE_Tnp_1_4 Location: 434450-435743 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 434450-435743 bp Feature: gene Location: 436010-437926 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 436634-437054 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 436634-437054 bp Feature: gene Location: 439708-440598 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 439732-439843 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 439732-439843 bp Feature: gene Location: 440856-444041 bp Feature: domain Description: AAA_16 Location: 440946-441441 bp Feature: domain Description: AAA_1 6 Location: 440946-441 441 bp Feature: domain Description: TPR Location: 442965-443298 bp Feature: domain Description: TPR Location: 442965-443298 bp Feature: domain Description: TPR Location: 443373-443451 bp Feature: domain Description: TPR Location: 443373-443451 bp Feature: domain Description: TPR_12 Location: 443604-443778 bp Feature: domain Description: TPR_1 2 Location: 443604-443778 bp Feature: gene Location: 6749679-6749957 bp Feature: domain Description: Transposase_mut Location: 6749796-6749928 bp Feature: domain Description: Transposase_mut Location: 6749796-6749928 bp Feature: gene Location: 6749966-6750283 bp Feature: gene Location: 6750707-6751051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6750824-6751019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6750824-6751 01 9 bp Feature: gene Location: 6751456-6752181 bp Feature: domain Description: COG3415 Location: 6751498-6751840 bp Feature: domain Description: COG341 5 Location: 6751 498-6751 840 bp Feature: gene Location: 6752685-6754016 bp Feature: domain Description: NodZ Location: 6753054-6754002 bp Feature: domain Description: NodZ Location: 6753054-6754002 bp Feature: gene Location: 6775002-6775355 bp Feature: domain Description: TnpB_IS66 Location: 6775029-6775317 bp Feature: domain Description: TnpB_IS66 Location: 6775029-677531 7 bp Feature: gene Location: 6775348-6775845 bp Feature: domain Description: InsE Location: 6775435-6775624 bp Feature: domain Description: InsE Location: 6775435-6775624 bp Feature: gene Location: 6775854-6776132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6775860-6776040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6775860-6776040 bp Feature: gene Location: 6776243-6776482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6776249-6776474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6776249-6776474 bp Feature: gene Location: 6776586-6776774 bp Feature: gene Location: 6776769-6779093 bp Feature: gene Location: 6828459-6828857 bp Feature: domain Description: TnpB_IS66 Location: 6828462-6828744 bp Feature: domain Description: TnpB_IS66 Location: 6828462-6828744 bp Feature: gene Location: 6828859-6829722 bp Feature: domain Description: COG3436 Location: 6829096-6829585 bp Feature: domain Description: COG3436 Location: 6829096-6829585 bp Feature: gene Location: 6829909-6831150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6830110-6830794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68301 1 0-6830794 bp Feature: gene Location: 6831360-6831488 bp Feature: gene Location: 6831842-6832378 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6831845-6832226 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6831 845-6832226 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6832247-6832361 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6832247-6832361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-UG12, PLDc_Bfil_DEXD_like (cd09117), AAA_16 (pfam13191), TPR (smart00028), TPR_12 (pfam13424), Transposase_mut (pfam00872), RVT-GII, COG3415 (Transposase ), NodZ (pfam05830)
TnpB_IS66 (pfam05717), InsE (COG2963), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: JABWSX010000003.1 Bradyrhizobium sp. 66S1MB Bradyrhizobium_sp_66S1MB_Contig3, whole genome shotgun sequence (200394 bp)
Overview 1 RT 1: 65805-69925 bp Neighborhood of RT #1 [65805, 70053] DDE_Tnp_IS66 RVT-GII GIIM TnpB_IS66 InsE Feature: gene Location: 65805-66764 bp Feature: domain Description: DDE_Tnp_IS66 Location: 65808-66684 bp Feature: domain Description: DDE_Tnp_IS66 Location: 65808-66684 bp Feature: gene Location: 66730-67548 bp Feature: gene Location: 67655-68929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67865-68522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67865-6852 2 bp Feature: domain Description: GIIM Note: maturase Location: 68603-68828 bp Feature: domain Description: GIIM Note: maturase Location: 68603-6882 8 bp Feature: gene Location: 69443-69661 bp Feature: domain Description: TnpB_IS66 Location: 69470-69620 bp Feature: domain Description: TnpB_IS66 Location: 69470-6962 0 bp Feature: gene Location: 69658-70053 bp Feature: domain Description: InsE Location: 69712-69925 bp Feature: domain Description: InsE Location: 69712 -6992 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), InsE (COG2963)