myRT

myRT report for GCA_013373895.1_ASM1337389v1

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Seq: BLXP01000035.1 Pseudomonas sp. BML-PP028 DNA, BML28_contig_35, whole genome shotgun sequence (91002 bp)
Overview 1 RT 1: 5783-10000 bp 2 RT 2: 84921-87696 bp Neighborhood of RT #1 [5783, 10101] InsE PHA02517 RVT-GII GIIM IS5 Ftsk_gamma HIRAN Neighborhood of RT #2 [84921, 87696] RVT-GII GIIM Feature: gene Location: 5783-6091 bp Feature: domain Description: InsE Location: 5786-6077 bp Feature: domain Description: InsE Location: 5786-6077 bp Feature: gene Location: 6136-6945 bp Feature: domain Description: PHA02517 Location: 6142-6919 bp Feature: domain Description: PHA0251 7 Location: 61 42-691 9 bp Feature: gene Location: 7201-8469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7414-8071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 4-8071 bp Feature: domain Description: GIIM Note: maturase Location: 8149-8371 bp Feature: domain Description: GIIM Note: maturase Location: 81 49-8371 bp Feature: gene Location: 8541-8999 bp Feature: domain Description: IS5 Location: 8544-8973 bp Feature: domain Description: IS5 Location: 8544-8973 bp Feature: gene Location: 9256-10101 bp Feature: domain Description: Ftsk_gamma Location: 9436-9610 bp Feature: domain Description: Ftsk_gamma Location: 9436-961 0 bp Feature: domain Description: HIRAN Location: 9865-10000 bp Feature: domain Description: HIRAN Location: 9865-1 0000 bp Feature: gene Location: 84921-85103 bp Feature: gene Location: 85251-85436 bp Feature: gene Location: 85571-86992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85928-86543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85928-86543 bp Feature: domain Description: GIIM Note: maturase Location: 86600-86825 bp Feature: domain Description: GIIM Note: maturase Location: 86600-86825 bp Feature: gene Location: 87143-87361 bp Feature: gene Location: 87394-87696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), IS5 (COG3039), Ftsk_gamma (smart00843), HIRAN (smart00910)

Seq: BLXP01000038.1 Pseudomonas sp. BML-PP028 DNA, BML28_contig_38, whole genome shotgun sequence (46218 bp)
Overview 1 RT 1: 43763-46018 bp Neighborhood of RT #1 [43763, 46185] RDD RVT-GII GIIM Feature: gene Location: 43763-44287 bp Feature: domain Description: RDD Location: 43793-44258 bp Feature: domain Description: RDD Location: 43793-442 58 bp Feature: gene Location: 44443-44628 bp Feature: gene Location: 44794-46185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45121-45736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4512 1-45736 bp Feature: domain Description: GIIM Note: maturase Location: 45790-46018 bp Feature: domain Description: GIIM Note: maturase Location: 45790-46018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RVT-GII, GIIM (pfam08388)

Seq: BLXP01000046.1 Pseudomonas sp. BML-PP028 DNA, BML28_contig_46, whole genome shotgun sequence (61916 bp)
Overview 1 RT 1: 27820-30808 bp Neighborhood of RT #1 [27820, 30808] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 27820-28392 bp Feature: domain Description: DUF1566 Location: 28153-28378 bp Feature: domain Description: DUF1566 Location: 28153 -283 78 bp Feature: gene Location: 28445-28798 bp Feature: domain Description: Avd_like Location: 28472-28778 bp Feature: domain Description: Avd_like Location: 28472-28778 bp Feature: gene Location: 28997-30154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29246-29930 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29246-2993 0 bp Feature: gene Location: 30216-30560 bp Feature: gene Location: 30557-30808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: BLXP01000061.1 Pseudomonas sp. BML-PP028 DNA, BML28_contig_61, whole genome shotgun sequence (21605 bp)
Overview 1 RT 1: 8702-13596 bp Neighborhood of RT #1 [8702, 13628] PRK13348 PBP2_LTTR_like_1 RVT-Retrons MFS_MucK Feature: gene Location: 8702-9622 bp Feature: domain Description: PRK13348 Location: 8714-8924 bp Feature: domain Description: PRK1334 8 Location: 8714 -8924 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 8987-9578 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 8987-9578 bp Feature: gene Location: 10169-10471 bp Feature: gene Location: 10474-11316 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10477-11044 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104 77-1104 4 bp Feature: gene Location: 11734-11871 bp Feature: gene Location: 12309-13628 bp Feature: domain Description: MFS_MucK Location: 12405-13596 bp Feature: domain Description: MFS_MucK Location: 124 05-13596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13348 (HTH-type transcriptional regulator ArgP), PBP2_LTTR_like_1 (cd08421), RVT-Retrons, MFS_MucK (cd17371)

Seq: BLXP01000070.1 Pseudomonas sp. BML-PP028 DNA, BML28_contig_70, whole genome shotgun sequence (16656 bp)
Overview 1 RT 1: 3-4567 bp Neighborhood of RT #1 [3, 4710] MDR7 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 Tra5 Feature: gene Location: 3-938 bp Feature: domain Description: MDR7 Location: 18-933 bp Feature: domain Description: MDR7 Location: 18-933 bp Feature: gene Location: 1209-1394 bp Feature: gene Location: 1595-2950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1886-2501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1886-25 01 bp Feature: domain Description: GIIM Note: maturase Location: 2558-2771 bp Feature: domain Description: GIIM Note: maturase Location: 25 5 8-2771 bp Feature: gene Location: 3290-3811 bp Feature: domain Description: HTH_Tnp_1 Location: 3317-3473 bp Feature: domain Description: HTH_Tnp_1 Location: 3317-3473 bp Feature: domain Description: HTH_Tnp_1 Location: 3494-3719 bp Feature: domain Description: HTH_Tnp_1 Location: 3494-3719 bp Feature: gene Location: 3808-4710 bp Feature: domain Description: Tra5 Location: 3916-4567 bp Feature: domain Description: Tra5 Location: 3916-45 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MDR7 (cd08276), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: BLXP01000097.1 Pseudomonas sp. BML-PP028 DNA, BML28_contig_97, whole genome shotgun sequence (36144 bp)
Overview 1 RT 1: 28729-32776 bp Neighborhood of RT #1 [28729, 32835] RVT-UG2 DEAH_box_HrpB Feature: gene Location: 28729-29982 bp Feature: gene Location: 30026-30235 bp Feature: gene Location: 30611-31894 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 30803-31589 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 30803-31589 bp Feature: gene Location: 32031-32309 bp Feature: gene Location: 32392-32835 bp Feature: domain Description: DEAH_box_HrpB Location: 32404-32776 bp Feature: domain Description: DEAH_box_HrpB Location: 32404-32776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DEAH_box_HrpB (TIGR01970)