myRT

myRT report for GCA_013374355.1_ASM1337435v1

Download annotations/find similar RTs

Seq: QBUT01000078.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_17, whole genome shotgun sequence (33425 bp)
Overview 1 RT 1: 20611-25801 bp Neighborhood of RT #1 [20611, 25854] COG1916 RVT_N RVT-GII LpqC Feature: gene Location: 20611-21894 bp Feature: domain Description: COG1916 Location: 20689-21805 bp Feature: domain Description: COG1 91 6 Location: 20689-21 805 bp Feature: gene Location: 21950-22420 bp Feature: gene Location: 22681-23613 bp Feature: RT Description: RVT_N Location: 22699-22894 bp Feature: RT Description: RVT_N Location: 22699-22894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22939-23599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22939-23599 bp Feature: gene Location: 23876-24100 bp Feature: gene Location: 24838-25854 bp Feature: domain Description: LpqC Location: 24949-25801 bp Feature: domain Description: LpqC Location: 24949-25801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1916 (Pheromone shutdown protein TraB, contains GTxH motif (function unknown) ), RVT_N (pfam13655), RVT-GII, LpqC (COG3509)

Seq: QBUT01000076.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_19, whole genome shotgun sequence (30000 bp)
Overview 1 RT 1: 1578-5280 bp Neighborhood of RT #1 [1578, 5288] C20_methyl_CrtF Methyltransf_2 RVT-GII group_II_RT_mat PRK00771 Feature: gene Location: 1578-2615 bp Feature: domain Description: C20_methyl_CrtF Location: 1671-1851 bp Feature: domain Description: C2 0_methyl_CrtF Location: 1671-1851 bp Feature: domain Description: Methyltransf_2 Location: 1992-2553 bp Feature: domain Description: Methyltransf_2 Location: 1992 -2 553 bp Feature: gene Location: 2969-3196 bp Feature: gene Location: 3274-3609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277-3490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 77-3490 bp Feature: gene Location: 3615-3857 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3675-3822 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3675-382 2 bp Feature: gene Location: 3870-5288 bp Feature: domain Description: PRK00771 Location: 3999-5280 bp Feature: domain Description: PRK00771 Location: 3999-52 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT C20_methyl_CrtF (TIGR02716), Methyltransf_2 (pfam00891), RVT-GII, group_II_RT_mat (TIGR04416), PRK00771 (signal recognition particle protein Srp54; Provisional)

Seq: QBUT01000093.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_2, whole genome shotgun sequence (82150 bp)
Overview 1 RT 1: 22022-26866 bp Neighborhood of RT #1 [22022, 26916] LysE PurD RVT-GII GIIM RVT_N RVT-GII Sm_multidrug_ex Feature: gene Location: 22022-22636 bp Feature: domain Description: LysE Location: 22076-22616 bp Feature: domain Description: LysE Location: 22076-22616 bp Feature: gene Location: 22672-23973 bp Feature: domain Description: PurD Location: 22675-23941 bp Feature: domain Description: PurD Location: 22675-23 941 bp Feature: gene Location: 24369-25229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24375-24894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 75-24894 bp Feature: domain Description: GIIM Note: maturase Location: 24951-25182 bp Feature: domain Description: GIIM Note: maturase Location: 24951-25182 bp Feature: gene Location: 25252-25527 bp Feature: RT Description: RVT_N Location: 25264-25369 bp Feature: RT Description: RVT_N Location: 25264-253 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25414-25504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25414-25504 bp Feature: gene Location: 25615-25974 bp Feature: gene Location: 26419-26916 bp Feature: domain Description: Sm_multidrug_ex Location: 26503-26866 bp Feature: domain Description: Sm_multidrug_ex Location: 26503 -26866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysE (pfam01810), PurD (COG0151), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), Sm_multidrug_ex (pfam06695)

Seq: QBUT01000065.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_30, whole genome shotgun sequence (21094 bp)
Overview 1 RT 1: 2-2550 bp Neighborhood of RT #1 [2, 2558] RVT-GII nifB NifU Feature: gene Location: 2-157 bp Feature: gene Location: 254-802 bp Feature: gene Location: 847-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-955 bp Feature: gene Location: 1411-2301 bp Feature: domain Description: nifB Location: 1474-2293 bp Feature: domain Description: nifB Location: 14 74 -2293 bp Feature: gene Location: 2298-2558 bp Feature: domain Description: NifU Location: 2352-2550 bp Feature: domain Description: NifU Location: 2352-2550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nifB (TIGR01290), NifU (pfam01106), RVT-GII

Seq: QBUT01000048.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_47, whole genome shotgun sequence (15078 bp)
Overview 1 RT 1: 12836-14874 bp Neighborhood of RT #1 [12836, 15077] XerC RVT_N RVT-GII Feature: gene Location: 12836-13786 bp Feature: domain Description: XerC Location: 12896-13748 bp Feature: domain Description: XerC Location: 12896-13748 bp Feature: gene Location: 13783-14349 bp Feature: gene Location: 14490-15077 bp Feature: RT Description: RVT_N Location: 14496-14646 bp Feature: RT Description: RVT_N Location: 14496-14646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14691-14874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14691-14874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT_N (pfam13655), RVT-GII

Seq: QBUT01000026.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_69, whole genome shotgun sequence (8511 bp)
Overview 1 RT 1: 6430-8485 bp Neighborhood of RT #1 [6430, 8508] COG1497 RVT-GII group_II_RT_mat Feature: gene Location: 6430-7215 bp Feature: domain Description: COG1497 Location: 6445-7207 bp Feature: domain Description: COG1497 Location: 6 445-7207 bp Feature: gene Location: 7483-7659 bp Feature: gene Location: 7790-8125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7793-8009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7793-8009 bp Feature: gene Location: 8131-8508 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8194-8485 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8194-8485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1497 (Predicted transcriptional regulator ), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: QBUT01000088.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_7, whole genome shotgun sequence (54206 bp)
Overview 1 RT 1: 50980-53982 bp Neighborhood of RT #1 [50980, 54203] F420_cofH RVT-GII GIIM Feature: gene Location: 50980-52437 bp Feature: domain Description: F420_cofH Location: 51313-52372 bp Feature: domain Description: F420_cofH Location: 51313-5237 2 bp Feature: gene Location: 52214-53281 bp Feature: gene Location: 53568-54203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53571-53694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5357 1-53694 bp Feature: domain Description: GIIM Note: maturase Location: 53748-53982 bp Feature: domain Description: GIIM Note: maturase Location: 537 48-53982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT F420_cofH (TIGR03551), RVT-GII, GIIM (pfam08388)

Seq: QBUT01000024.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_71, whole genome shotgun sequence (6845 bp)
Overview 1 RT 1: 1-2995 bp Neighborhood of RT #1 [1, 3003] RVT-GII GIIM RVT_N RVT-GII COG1831 Feature: gene Location: 1-156 bp Feature: gene Location: 216-878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219-666 bp Feature: domain Description: GIIM Note: maturase Location: 720-867 bp Feature: domain Description: GIIM Note: maturase Location: 720-8 67 bp Feature: gene Location: 907-1350 bp Feature: RT Description: RVT_N Location: 925-1120 bp Feature: RT Description: RVT_N Location: 925-1120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165-1273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165-1273 bp Feature: gene Location: 1634-1837 bp Feature: gene Location: 2164-3003 bp Feature: domain Description: COG1831 Location: 2170-2995 bp Feature: domain Description: COG18 31 Location: 2170-2995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), COG1831 (Predicted metal-dependent hydrolase, urease superfamily )

Seq: QBUT01000086.1 ANME-2 cluster archaeon isolate AMVER4-21 KMMCEEHM_9, whole genome shotgun sequence (51413 bp)
Overview 1 RT 1: 2-1668 bp Neighborhood of RT #1 [2, 1668] RVT-GII RVT-GII Feature: gene Location: 2-139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-128 bp Feature: gene Location: 196-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-9 46 bp Feature: gene Location: 978-1382 bp Feature: gene Location: 1492-1668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII