myRT

myRT report for GCA_013374695.1_ASM1337469v1

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Seq: JAAEYJ010000325.1 Pseudomonas syringae pv. actinidiae strain MAFF 211981 Psa1-211981_contig_325, whole genome shotgun sequence (2392 bp)
Overview 1 RT 1: 10-2261 bp Neighborhood of RT #1 [10, 2389] RVT-Retrons DDE_3 Feature: gene Location: 10-216 bp Feature: gene Location: 382-2091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 421-1048 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 421 -1 048 bp Feature: gene Location: 2120-2389 bp Feature: domain Description: DDE_3 Location: 2135-2261 bp Feature: domain Description: DDE_3 Location: 21 35-2261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons

Seq: JAAEYJ010000056.1 Pseudomonas syringae pv. actinidiae strain MAFF 211981 Psa1-211981_contig_56, whole genome shotgun sequence (2131 bp)
Overview 1 RT 1: 6-2087 bp Neighborhood of RT #1 [6, 2087] RVT-GII GIIM Feature: gene Location: 6-170 bp Feature: gene Location: 187-1473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1045 bp Feature: domain Description: GIIM Note: maturase Location: 1090-1300 bp Feature: domain Description: GIIM Note: maturase Location: 1090-1300 bp Feature: gene Location: 1695-2087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAEYJ010000075.1 Pseudomonas syringae pv. actinidiae strain MAFF 211981 Psa1-211981_contig_75, whole genome shotgun sequence (16546 bp)
Overview 1 RT 1: 5771-12805 bp Neighborhood of RT #1 [5771, 12981] DUF4007 RVT-GII InsE Feature: gene Location: 5771-9229 bp Feature: gene Location: 9222-10127 bp Feature: domain Description: DUF4007 Location: 9255-10074 bp Feature: domain Description: DUF4007 Location: 9255-10074 bp Feature: gene Location: 10706-12298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11216-11906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11216-11906 bp Feature: gene Location: 12163-12501 bp Feature: gene Location: 12625-12981 bp Feature: domain Description: InsE Location: 12664-12805 bp Feature: domain Description: InsE Location: 12664-12805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), DUF4007 (pfam13182)