myRT

myRT report for GCA_013374745.1_ASM1337474v1

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Seq: JAAEYN010000189.1 Pseudomonas syringae pv. actinidiae strain MAFF 212324 Psa1-212324_contig_189, whole genome shotgun sequence (22132 bp)
Overview 1 RT 1: 1532-6574 bp Neighborhood of RT #1 [1532, 6574] RVT-UG15 SIRT5_Af1_CobB Feature: gene Location: 1532-1708 bp Feature: gene Location: 1724-1996 bp Feature: gene Location: 2826-4472 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3273-3684 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 3273-3684 bp Feature: gene Location: 4753-5304 bp Feature: domain Description: SIRT5_Af1_CobB Location: 4807-5239 bp Feature: domain Description: SIRT5_Af1 _CobB Location: 4807-5239 bp Feature: gene Location: 5387-6574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, SIRT5_Af1_CobB (cd01412)

Seq: JAAEYN010000274.1 Pseudomonas syringae pv. actinidiae strain MAFF 212324 Psa1-212324_contig_274, whole genome shotgun sequence (1981 bp)
Overview 1 RT 1: 90-1978 bp Neighborhood of RT #1 [90, 1978] RVT-GII GIIM Feature: gene Location: 90-1457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 3-1038 bp Feature: domain Description: GIIM Note: maturase Location: 1095-1323 bp Feature: domain Description: GIIM Note: maturase Location: 1095-132 3 bp Feature: gene Location: 1838-1978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAEYN010000421.1 Pseudomonas syringae pv. actinidiae strain MAFF 212324 Psa1-212324_contig_421, whole genome shotgun sequence (1835 bp)
Overview 1 RT 1: 3-1325 bp Neighborhood of RT #1 [3, 1834] DDE_3 RVT-Retrons Feature: gene Location: 3-341 bp Feature: domain Description: DDE_3 Location: 27-213 bp Feature: domain Description: DDE_3 Location: 27-213 bp Feature: gene Location: 569-1834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 698-1325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 698-13 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-Retrons

Seq: JAAEYN010000097.1 Pseudomonas syringae pv. actinidiae strain MAFF 212324 Psa1-212324_contig_97, whole genome shotgun sequence (2235 bp)
Overview 1 RT 1: 72-1880 bp Neighborhood of RT #1 [72, 2053] RVT-GII GIIM Feature: gene Location: 72-545 bp Feature: gene Location: 770-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1625 bp Feature: domain Description: GIIM Note: maturase Location: 1670-1880 bp Feature: domain Description: GIIM Note: maturase Location: 1670-1880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)