myRT

myRT report for GCA_013374895.1_ASM1337489v1

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Seq: JAATVF010000025.1 Escherichia coli strain 16-16a Eco130_contig_25, whole genome shotgun sequence (262911 bp)
Overview 1 RT 1: 2404-10811 bp Neighborhood of RT #1 [2404, 10813] phage_tail_N Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2404-5754 bp Feature: domain Description: phage_tail_N Location: 2407-2806 bp Feature: domain Description: phage_tail_N Location: 2407-2806 bp Feature: domain Description: Collar Location: 5125-5263 bp Feature: domain Description: Collar Location: 51 25-5263 bp Feature: domain Description: Phage_fiber Location: 5314-5353 bp Feature: domain Description: Phage_fiber Location: 531 4-5353 bp Feature: domain Description: Phage_fiber Location: 5410-5449 bp Feature: domain Description: Phage_fiber Location: 541 0-5449 bp Feature: domain Description: Phage_fiber Location: 5557-5596 bp Feature: domain Description: Phage_fiber Location: 5557-5596 bp Feature: domain Description: Phage_fiber Location: 5602-5635 bp Feature: domain Description: Phage_fiber Location: 5602-5635 bp Feature: gene Location: 5754-6338 bp Feature: domain Description: Caudo_TAP Location: 5970-6327 bp Feature: domain Description: Caudo_TAP Location: 5970-6327 bp Feature: gene Location: 6783-8387 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7074-7665 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7074-7665 bp Feature: domain Description: TIR_2 Location: 7992-8280 bp Feature: domain Description: TIR_2 Location: 7992-8280 bp Feature: gene Location: 8747-9007 bp Feature: domain Description: PRK10597 Location: 8750-8990 bp Feature: domain Description: PRK1 0597 Location: 8750-8990 bp Feature: gene Location: 9227-10813 bp Feature: domain Description: prfC Location: 9245-10811 bp Feature: domain Description: prfC Location: 9245-1 081 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: JAATVF010000051.1 Escherichia coli strain 16-16a Eco130_contig_51, whole genome shotgun sequence (24752 bp)
Overview 1 RT 1: 11508-14962 bp Neighborhood of RT #1 [11508, 15027] PHA02517 rve PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11508-11798 bp Feature: domain Description: PHA02517 Location: 11562-11601 bp Feature: domain Description: PHA02 517 Location: 11562 -11601 bp Feature: domain Description: rve Location: 11613-11751 bp Feature: domain Description: rve Location: 11613-11751 bp Feature: gene Location: 12068-12514 bp Feature: domain Description: PHA02517 Location: 12071-12512 bp Feature: domain Description: PHA02 517 Location: 12 071-12 512 bp Feature: gene Location: 12631-14154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12904-13636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 904-13636 bp Feature: domain Description: GIIM Note: maturase Location: 13711-13909 bp Feature: domain Description: GIIM Note: maturase Location: 13711-13909 bp Feature: gene Location: 14108-14533 bp Feature: gene Location: 14746-15027 bp Feature: domain Description: PHA02517 Location: 14752-14962 bp Feature: domain Description: PHA02 517 Location: 14752 -14962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), rve (pfam00665), RVT-GII, GIIM (pfam08388)