myRT

myRT report for GCA_013374925.1_ASM1337492v1

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Seq: JAATVG010000003.1 Escherichia coli strain 16-16b Eco131_contig_3, whole genome shotgun sequence (266771 bp)
Overview 1 RT 1: 6286-14693 bp Neighborhood of RT #1 [6286, 14695] phage_tail_N Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 6286-9636 bp Feature: domain Description: phage_tail_N Location: 6289-6688 bp Feature: domain Description: phage_tail_N Location: 6289-6688 bp Feature: domain Description: Collar Location: 9007-9145 bp Feature: domain Description: Collar Location: 9007-91 45 bp Feature: domain Description: Phage_fiber Location: 9196-9235 bp Feature: domain Description: Phage_fiber Location: 91 96-9235 bp Feature: domain Description: Phage_fiber Location: 9292-9331 bp Feature: domain Description: Phage_fiber Location: 9292-9331 bp Feature: domain Description: Phage_fiber Location: 9439-9478 bp Feature: domain Description: Phage_fiber Location: 9439-9478 bp Feature: domain Description: Phage_fiber Location: 9484-9517 bp Feature: domain Description: Phage_fiber Location: 9484-951 7 bp Feature: gene Location: 9636-10220 bp Feature: domain Description: Caudo_TAP Location: 9852-10209 bp Feature: domain Description: Caudo_TAP Location: 9852-1 0209 bp Feature: gene Location: 10665-12269 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10956-11547 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0956-1 1 547 bp Feature: domain Description: TIR_2 Location: 11874-12162 bp Feature: domain Description: TIR_2 Location: 1 1 874-1 21 62 bp Feature: gene Location: 12629-12889 bp Feature: domain Description: PRK10597 Location: 12632-12872 bp Feature: domain Description: PRK1 0597 Location: 1 2632-1 2872 bp Feature: gene Location: 13109-14695 bp Feature: domain Description: prfC Location: 13127-14693 bp Feature: domain Description: prfC Location: 1 31 27-1 4693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), phage_tail_N (pfam08400), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413)

Seq: JAATVG010000033.1 Escherichia coli strain 16-16b Eco131_contig_33, whole genome shotgun sequence (24752 bp)
Overview 1 RT 1: 9550-13198 bp Neighborhood of RT #1 [9550, 13245] PHA02517 RVT-GII GIIM PHA02517 PHA02517 rve Feature: gene Location: 9550-9678 bp Feature: gene Location: 9726-10007 bp Feature: domain Description: PHA02517 Location: 9732-9942 bp Feature: domain Description: PHA02 517 Location: 9732 -9942 bp Feature: gene Location: 10599-12122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10872-11604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10872 -11604 bp Feature: domain Description: GIIM Note: maturase Location: 11679-11877 bp Feature: domain Description: GIIM Note: maturase Location: 11679-11877 bp Feature: gene Location: 12239-12685 bp Feature: domain Description: PHA02517 Location: 12242-12683 bp Feature: domain Description: PHA02 517 Location: 12 2 42 -12 683 bp Feature: gene Location: 12955-13245 bp Feature: domain Description: PHA02517 Location: 13009-13048 bp Feature: domain Description: PHA02 517 Location: 13009-13048 bp Feature: domain Description: rve Location: 13060-13198 bp Feature: domain Description: rve Location: 13060-13198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), rve (pfam00665)